Update Data processing and plotting/Image analysis data processing and plotting/Figure 5I - LaminB1 staining/Environment.RData, Data processing and plotting/Image analysis data processing and plotting/Figure 5I - LaminB1 staining/LMNB1 stainings.Rmd

Update MEA analysis/Environment.RData, MEA analysis/MEA_per_electrode.Rmd, MEA analysis/MEA_per_electrode.nb.html, Metabolic modelling/Matlab files scripts/CountReconSubsystems.mlx, Metabolic modelling/Matlab files scripts/fastcormicsRNAseq.mlx, Metabolic modelling/Matlab files scripts/Model_comarison_2xWTvs2xMUT.mlx, Metabolic modelling/Matlab files scripts/modelMUTKT16.mat, Metabolic modelling/Matlab files scripts/modelWT56.mat, Metabolic modelling/Matlab files scripts/Recon3DModel_301.mat, Metabolic modelling/Matlab files scripts/Similarity_index_script.mlx, Metabolic modelling/Matlab files scripts/modelMUT309.mat, Metabolic modelling/Matlab files scripts/modelWT39.mat, Metabolic modelling/Matlab files scripts/modelWT68.mat, Metabolic modelling/Matlab files scripts/Similarity_indexMUTvsCTRLs.mat, Metabolic modelling/Matlab files scripts/Similarity_index_all10comparisons.mat, Metabolic modelling/Matlab files scripts/model_generation22102021.mat, Metabolic modelling/Matlab files scripts/Similarity index Ali/model_1.mat, Metabolic modelling/Matlab files scripts/Similarity index Ali/model_2.mat, Metabolic modelling/Matlab files scripts/Similarity index Ali/similarity+part2.mat, Metabolic modelling/Matlab files scripts/Similarity index Ali/Calculate_FVA_Similarity_Example.m, Metabolic modelling/Matlab files scripts/Similarity index Ali/FVA_similarity_Thomas.m, Metabolic modelling/Matlab files scripts/Similarity index Ali/similarity_part2.mat, Metabolic modelling/R files scripts/Data_prep_for_fastcormics2.Rmd, Metabolic modelling/R files scripts/Similarity_bubble_charts.Rmd, Metabolic modelling/R files scripts/Variables_Data_prep_for_fastcormics2.RData

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Update Data processing and plotting/Figure 1B - GCase activity/Environment.RData, Data processing and plotting/Figure 1B - GCase activity/GCase.Rmd, Data processing and plotting/Figure 1B - GCase activity/GCase.nb.html, Data processing and plotting/Figure 4A - DA ELISA/DA ELISA plots.nb.html, Data processing and plotting/Figure 4A - DA ELISA/DA ELISA plots.Rmd, Data processing and plotting/Figure 5A - DA genes/Environment.RData, Data processing and plotting/Figure 5A - DA genes/DA differentiation genes.Rmd, Data processing and plotting/Figure 5G - PI staining_Cell cycle plotting/Environment.RData, Data processing and plotting/Figure 5G - PI staining_Cell cycle plotting/PI staining.Rmd, Data processing and plotting/Figure 5G - PI staining_Cell cycle plotting/PI staining.nb.html, Data processing and plotting/Figure S3D - Seahorse/Environment.RData, Data processing and plotting/Figure S3D - Seahorse/Plots Seahorse.Rmd, Data processing and plotting/Figure S4D - PI signaling genes/Environment.RData, Data processing and plotting/Figure S4D - PI signaling genes/PI signaling genes.Rmd, Data processing and plotting/Figure S7C - OrganoidSize/Environment.RData, Data processing and plotting/Figure S7C - OrganoidSize/Plots_OrganoidSize.Rmd, Data processing and plotting/Image analysis data processing and plotting/Environment.RData, Data processing and plotting/Image analysis data processing and plotting/Stainings.Rmd, Data processing and plotting/Image analysis data processing and plotting/Stainings.nb.html, Data processing and plotting/Image analysis data processing and plotting/Figure 5L - LaminB1 staining/Environment.RData, Data processing and plotting/Image analysis data processing and plotting/Figure 5L - LaminB1 staining/LMNB1 stainings.Rmd, Data processing and plotting/WB data processing and plotting/Environment.RData, Data processing and plotting/WB data processing and plotting/WB data processing and plotting.nb.html, Data processing and plotting/WB data processing and plotting/WB data processing and plotting.Rmd

Update Data processing and plotting/Enrichment analysis plotting/Environment.RData, Data processing and plotting/Enrichment analysis plotting/Visualization_of_enrichment_analysis_.Rmd
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