Skip to content
Snippets Groups Projects

Add missing groundings from Gilda

Open Benjamin M. Gyori requested to merge grounding into master

For downstream use of these models, having identifiers associated with each entity is important but several species are missing these identifier annotations. I wrote a script to process all the _stable.xml files in this repo and find species that are missing identifiers. I used Gilda (https://github.com/indralab/gilda) to find an appropriate grounding for these species based on their string name, and if found, add this automatically to the xml, and then re-serialize it to be able to PR the changes. In total, 423 groundings are added.

Merge request reports

Loading
Loading

Activity

Filter activity
  • Approvals
  • Assignees & reviewers
  • Comments (from bots)
  • Comments (from users)
  • Commits & branches
  • Edits
  • Labels
  • Lock status
  • Mentions
  • Merge request status
  • Tracking
Please register or sign in to reply
Loading