@@ -17,5 +17,5 @@ To place our results in the context of the whole study, we matched the genes obt
## Markdowns
1. The notebook containing the footprint-based analysis can be found [here](https://git-r3lab.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/02_Carnival_Transcriptomics_phosphoprotemicsMann.md).
2. The notebook containing the analysis to match the footprint-based results with the content of the disease map communicaty can be found [here](https://git-r3lab.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/Matching_with_Covid19DM_Diagrams/grep_disease_maps.md)
2. The notebook containing the analysis to match the footprint-based results with the content of the disease map communicaty can be found [here](https://git-r3lab.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/Matching_with_Covid19DM_Diagrams/grep_disease_maps.md). The results are stored [here](https://gitlab.lcsb.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/Matching_with_Covid19DM_Diagrams/MatchingGenes/carnival_diagrams.tsv)
3. The notebook containing the analysis to match the footprint-based results with drug-targets can be found [here](https://gitlab.lcsb.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/Matching_with_DrugTargets/grep_drug_targets.md). The results are stored [here](https://gitlab.lcsb.uni.lu/computational-modelling-and-simulation/footprint-based-analysis-and-causal-network-contextualisation-in-sars-cov-2-infected-a549-cell-line/-/blob/master/Matching_with_DrugTargets/MatchingDrugs/carnival_drugs.tsv)
