Skip to content
Snippets Groups Projects
Commit e9b33adb authored by Loic Marx's avatar Loic Marx
Browse files

fixing conflict

parents f1ffdfc3 b2bb4c40
No related branches found
No related tags found
2 merge requests!3Regular merge of develop,!2Seeg algorithm
% expand the brain mask to threshold the image so we don't get artifacts
% from everything that it causing them outside of
% the brain, besides the electrode head candidates
% CT_post = NiftiMod('seeg_electrode_additional_tryout_high_threshold_2.nii.gz');
% Brain_mask = NiftiMod('brain_mask.nii.gz');
brainMaskImg = Brain_mask.img;
structEl = strel('sphere', 3);
expndBrainMask = imdilate(brainMaskImg, structEl);
isosurface(expndBrainMask);
\ No newline at end of file
% PCA
%CT_post = NiftiMod('Seeg_chinese_1_before_final.nii');
%CT_post = NiftiMod('seeg_seg_bul_inside_binary.nii');
CT_post = NiftiMod('seeg_electrode_additional_tryout_high_threshold_2.nii.gz');
......@@ -28,6 +27,19 @@ MAXVOXELNUMBER_CONTACTS = 150;
MINVOXELNUMBER_HEAD = 200;
MAXVOXELNUMBER_HEAD = 2000;
%% TODO: rename brainmask files in all folders to not get them confused!!!
%
% CT_post = NiftiMod('seeg_electrode_additional_tryout_high_threshold_2.nii.gz');
% Brain_mask = NiftiMod('brain_mask.nii.gz');
% Brain_mask_img = Brain_mask.img;
%
% bm = bwconncomp(Brain_mask_img,26);
%
% bmProps = regionprops(bm, Brain_mask.img, 'Area', 'PixelIdxList', 'PixelList', 'PixelValues', 'BoundingBox', 'Centroid');
% [areas, idxs] = sort([bmProps.Area], 'descend'); % sort by size
%
% bm_centroid = bmProps(idxs(:,1)).Centroid
%% TODO: find some solution for electrodes, where the contacts regions are "melted" together and no seperate
%% regions and head are defined
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment