revet changes from commit 3e19938a

2021/2021-04-20_IT101-DM/slides/data-housekeeping.md

@@ -73,13 +73,6 @@ From Jenny Bryan by CC-BY
 * Separate files you are actively working from the old ones  
 * Orient newcomers to the group's conventions
 
-<div style="position:absolute;left:43%;top:10%">
-<img src="slides/img/folder_structure.png" height="700px">
-</div>
-<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
-<a href="https://riojournal.com/article/56508/" style="color:grey; font-size:0.8em;">Foundational Practices of Research Data Management</a>
-</div>
-
 
 
 # Data housekeeping

2021/2021-04-20_IT101-DM/slides/ingestion.md

@@ -4,34 +4,50 @@
 <img src="slides/img/LCSB_storages_full.png" height="750px">
 </div>
 
-<div class='fragment' style="position:relative">
+<div class='fragment' style="position:absolute">
 <img src="slides/img/LCSB_storages_personal-crossed.png" height="750px">
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+
+
+# Data ingestion/transfer
+## Receiving and sending data 
 
-<div style="position:absolute;left:65%;top:60%">
+<img height="400px" style="position:relative;left:10%" src="slides/img/banned_exchange_channels.png"><br>
+<div style="position:absolute; left:10%;width:30%">
 
-* Unless consortium/project has formally agreed to use a secure commercial cloud
+## E-mail is not for data transfer
+
+* Avoid transfer of any data by e-mail
+* E-mail is a poor repository
+* Data can be read on passage
 
 </div>
+<div class="fragment" style="left:50%; width:30%; position:absolute">
 
+## Exchanging data
+* Share on Atlas server
+* OwnCloud share (LCSB - BioCore)
+* DropIt service (SIU)
+* LFT (IBM Aspera) share for sensitive data
+</div>
 </div>
 
 <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
-<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-05" style="color:grey; font-size:0.8em;">Research Human Data Sharing Policy</a>
 </div>
 
 
 
-
-# Data ingestion: Transfer and Integrity
-  * When sending data: <font color="red">Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!</font>
-
-<div class="fragment">
+# Data ingestion/transfer
 Data can be corrupted:
-
   * (non-)malicious modification
   * faulty file transfer
   * disk corruption
-</div>
   
 <div class="fragment">
 
@@ -39,8 +55,8 @@ Data can be corrupted:
 
  * disable write access to the source data
  * generate checksums!
- 
-<div style="position:absolute;left:40%;top:30%">
+
+<div style="position:absolute;left:40%">
 <img src="slides/img/checksum.png" width="500px">
 </div>
 </div>
@@ -61,30 +77,3 @@ Data can be corrupted:
 <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
 <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
 </div>
-
-
-
-# Data ingestion/Integrity
-## Encryption
-<div class='fragment' style="position:relative;left:25%;top:60%">
-<img  align="middle" height="300px" src="slides/img/encryption.png">
-</div>
-
-<div class='fragment'>
-
-* Guaranted confidentiality
-</div>
-<div class='fragment'>
-
-* Encryption key need to be kept safe
-</div>
-<div class='fragment'>
-
-* <font color= red>Loosing your encryption key means loosing your data!</font>
-</div>
-<div class='fragment'>
-
-* Make a off-site backup of your data
-</div>
-
-

2021/2021-04-20_IT101-DM/slides/introduction.md

@@ -24,5 +24,3 @@ Prof. Dr. Rudi Balling, director
    * Technicians
    * Administrators
 </div>
-
-

2021/2021-04-20_IT101-DM/slides/list.json

 [
-    { "filename": "index.md" },
-    { "filename": "introduction.md" },
-    { "filename": "access_management.md" },
-    { "filename": "data-introduction.md" },
-    { "filename": "data_flow.md" },
-    { "filename": "ingestion.md" },
-    { "filename": "storage_setup.md" },
-    { "filename": "data-housekeeping.md" },
-    { "filename": "howtos.md" },
-    { "filename": "reproducibility.md" },
-    { "filename": "code_versioning.md" },
-    { "filename": "visualization.md" },
-    { "filename": "data_life_cycle.md" },
-    { "filename": "problem_solving.md" },
-    { "filename": "fair-principles.md" },
-    { "filename": "r3_group.md" },
-    { "filename": "thanks.md" }
-]
\ No newline at end of file
+    {"filename": "index.md"},
+    {"filename": "introduction.md"},
+    {"filename": "data-introduction.md"},
+    {"filename": "data_flow.md"},
+    {"filename": "ingestion.md"},
+    {"filename": "storage_setup.md"},
+    {"filename": "data-housekeeping.md"},
+    {"filename": "howtos.md"},
+    {"filename": "reproducibility.md"},
+    {"filename": "code_versioning.md"},
+    {"filename": "visualization.md"},
+    {"filename": "problem_solving.md"},
+    {"filename": "fair-principles.md"},
+    {"filename": "r3_group.md"},
+    {"filename": "thanks.md"}
+]

2021/2021-04-20_IT101-DM/slides/reproducibility.md

@@ -15,7 +15,7 @@
   * Copy & paste operations
   * Manual text entry
   * Analysis not coded
- 
+  * Intermediate and final data not generated by deterministic processes
 </div>
 
 
@@ -94,4 +94,3 @@
 <img src="slides/img/red-cross.png" width="700px"><br>
 </div>
 </div>
-

2021/2021-04-20_IT101-DM/slides/storage_setup.md

@@ -4,8 +4,12 @@
 * Regularly update your SW/OS
 * Encrypt movable media
 
+### Passwords
 
-<div class="fragment" >
+* Strong passwords
+* Password manager
+* Safe password exchange channels
+* Expiration time on password share
 
 ### Backup
   * take care of your own backups!
@@ -20,35 +24,6 @@
 <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
 </div>
 
-</div>
-
-<div class="fragment">
-
-### Passwords
-
-* Strong passwords
-* Password manager
-* Safe password exchange channels
-* Expiration time on password share
-</div>
-
-
-
-# Storage set-up
-## Password exchange channels
-<div style="position:relative">
-<img src="slides/img/privateBin.png" height="350px">
-</div>
-<div style="position:absolute;left:65%;top:85%">
-
-
-* Free service provided by LSCB at <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
-* **LUMS** account is required
-* Set expiry period
-* Can expire upon first access
-* Password only accessible by sender and recipient
-</div>
-
 
 
 # Storage set-up

2021/2021-04-20_IT101-DM/slides/thanks.md

@@ -18,7 +18,7 @@ Course Slides: https://courses.lcsb.uni.lu/
 
 Internal Presentations: https://presentations.lcsb.uni.lu/
 
-LCSB GitLab: https://gitlab.lcsb.uni.lu/
+LCSB GitLab: https://git-r3lab.uni.lu/
 
 HPC: https://hpc.uni.lu/