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c41a3798
Commit
c41a3798
authored
Jul 28, 2021
by
Nene Barry
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2021/2021-04-20_IT101-DM/slides/data-housekeeping.md
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c41a3798
...
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@@ -73,13 +73,6 @@ From Jenny Bryan by CC-BY
*
Separate files you are actively working from the old ones
*
Orient newcomers to the group's conventions
<div
style=
"position:absolute;left:43%;top:10%"
>
<img
src=
"slides/img/folder_structure.png"
height=
"700px"
>
</div>
<div
style=
"position:absolute; width:45%; left:50%; top:28em; text-align:right"
>
<a
href=
"https://riojournal.com/article/56508/"
style=
"color:grey; font-size:0.8em;"
>
Foundational Practices of Research Data Management
</a>
</div>
# Data housekeeping
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2021/2021-04-20_IT101-DM/slides/ingestion.md
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c41a3798
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@@ -4,34 +4,50 @@
<img
src=
"slides/img/LCSB_storages_full.png"
height=
"750px"
>
</div>
<div
class=
'fragment'
style=
"position:
relativ
e"
>
<div
class=
'fragment'
style=
"position:
absolut
e"
>
<img
src=
"slides/img/LCSB_storages_personal-crossed.png"
height=
"750px"
>
</div>
<div
style=
"position:absolute; width:45%; left:50%; top:28em; text-align:right"
>
<a
href=
" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02"
style=
"color:grey; font-size:0.8em;"
>
Data Storage and Backup Policy
</a>
</div>
# Data ingestion/transfer
## Receiving and sending data
<div
style=
"position:absolute;left:65%;top:60%"
>
<img
height=
"400px"
style=
"position:relative;left:10%"
src=
"slides/img/banned_exchange_channels.png"
><br>
<div
style=
"position:absolute; left:10%;width:30%"
>
*
Unless consortium/project has formally agreed to use a secure commercial cloud
## E-mail is not for data transfer
*
Avoid transfer of any data by e-mail
*
E-mail is a poor repository
*
Data can be read on passage
</div>
<div
class=
"fragment"
style=
"left:50%; width:30%; position:absolute"
>
## Exchanging data
*
Share on Atlas server
*
OwnCloud share (LCSB - BioCore)
*
DropIt service (SIU)
*
LFT (IBM Aspera) share for sensitive data
</div>
</div>
<div
style=
"position:absolute; width:45%; left:50%; top:28em; text-align:right"
>
<a
href=
" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-0
2
"
style=
"color:grey; font-size:0.8em;"
>
Data Storage and Backup
Policy
</a>
<a
href=
" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-0
5
"
style=
"color:grey; font-size:0.8em;"
>
Research Human Data Sharing
Policy
</a>
</div>
# Data ingestion: Transfer and Integrity
*
When sending data:
<font
color=
"red"
>
Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!
</font>
<div
class=
"fragment"
>
# Data ingestion/transfer
Data can be corrupted:
*
(non-)malicious modification
*
faulty file transfer
*
disk corruption
</div>
<div
class=
"fragment"
>
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@@ -39,8 +55,8 @@ Data can be corrupted:
*
disable write access to the source data
*
generate checksums!
<div
style=
"position:absolute;left:40%
;top:30%
"
>
<div
style=
"position:absolute;left:40%"
>
<img
src=
"slides/img/checksum.png"
width=
"500px"
>
</div>
</div>
...
...
@@ -61,30 +77,3 @@ Data can be corrupted:
<div
style=
"position:absolute; width:45%; left:50%; top:28em; text-align:right"
>
<a
href=
" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02"
style=
"color:grey; font-size:0.8em;"
>
Data Storage and Backup Policy
</a>
</div>
# Data ingestion/Integrity
## Encryption
<div
class=
'fragment'
style=
"position:relative;left:25%;top:60%"
>
<img
align=
"middle"
height=
"300px"
src=
"slides/img/encryption.png"
>
</div>
<div
class=
'fragment'
>
*
Guaranted confidentiality
</div>
<div
class=
'fragment'
>
*
Encryption key need to be kept safe
</div>
<div
class=
'fragment'
>
*
<font
color=
red
>
Loosing your encryption key means loosing your data!
</font>
</div>
<div
class=
'fragment'
>
*
Make a off-site backup of your data
</div>
2021/2021-04-20_IT101-DM/slides/introduction.md
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c41a3798
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@@ -24,5 +24,3 @@ Prof. Dr. Rudi Balling, director
*
Technicians
*
Administrators
</div>
2021/2021-04-20_IT101-DM/slides/list.json
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c41a3798
[
{
"filename"
:
"index.md"
},
{
"filename"
:
"introduction.md"
},
{
"filename"
:
"access_management.md"
},
{
"filename"
:
"data-introduction.md"
},
{
"filename"
:
"data_flow.md"
},
{
"filename"
:
"ingestion.md"
},
{
"filename"
:
"storage_setup.md"
},
{
"filename"
:
"data-housekeeping.md"
},
{
"filename"
:
"howtos.md"
},
{
"filename"
:
"reproducibility.md"
},
{
"filename"
:
"code_versioning.md"
},
{
"filename"
:
"visualization.md"
},
{
"filename"
:
"data_life_cycle.md"
},
{
"filename"
:
"problem_solving.md"
},
{
"filename"
:
"fair-principles.md"
},
{
"filename"
:
"r3_group.md"
},
{
"filename"
:
"thanks.md"
}
]
\ No newline at end of file
{
"filename"
:
"index.md"
},
{
"filename"
:
"introduction.md"
},
{
"filename"
:
"data-introduction.md"
},
{
"filename"
:
"data_flow.md"
},
{
"filename"
:
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},
{
"filename"
:
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},
{
"filename"
:
"data-housekeeping.md"
},
{
"filename"
:
"howtos.md"
},
{
"filename"
:
"reproducibility.md"
},
{
"filename"
:
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},
{
"filename"
:
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},
{
"filename"
:
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},
{
"filename"
:
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},
{
"filename"
:
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},
{
"filename"
:
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}
]
2021/2021-04-20_IT101-DM/slides/reproducibility.md
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c41a3798
...
...
@@ -15,7 +15,7 @@
*
Copy & paste operations
*
Manual text entry
*
Analysis not coded
*
Intermediate and final data not generated by deterministic processes
</div>
...
...
@@ -94,4 +94,3 @@
<img
src=
"slides/img/red-cross.png"
width=
"700px"
><br>
</div>
</div>
2021/2021-04-20_IT101-DM/slides/storage_setup.md
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c41a3798
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@@ -4,8 +4,12 @@
*
Regularly update your SW/OS
*
Encrypt movable media
### Passwords
<div
class=
"fragment"
>
*
Strong passwords
*
Password manager
*
Safe password exchange channels
*
Expiration time on password share
### Backup
*
take care of your own backups!
...
...
@@ -20,35 +24,6 @@
<a
href=
" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02"
style=
"color:grey; font-size:0.8em;"
>
Data Storage and Backup Policy
</a>
</div>
</div>
<div
class=
"fragment"
>
### Passwords
*
Strong passwords
*
Password manager
*
Safe password exchange channels
*
Expiration time on password share
</div>
# Storage set-up
## Password exchange channels
<div
style=
"position:relative"
>
<img
src=
"slides/img/privateBin.png"
height=
"350px"
>
</div>
<div
style=
"position:absolute;left:65%;top:85%"
>
*
Free service provided by LSCB at
<a
href=
"https://privatebin.lcsb.uni.lu"
style=
"color:blue; font-size:0.8em;"
>
privatebin.lcsb.uni.lu
</a>
*
**LUMS**
account is required
*
Set expiry period
*
Can expire upon first access
*
Password only accessible by sender and recipient
</div>
# Storage set-up
...
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2021/2021-04-20_IT101-DM/slides/thanks.md
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c41a3798
...
...
@@ -18,7 +18,7 @@ Course Slides: https://courses.lcsb.uni.lu/
Internal Presentations: https://presentations.lcsb.uni.lu/
LCSB GitLab: https://git
lab.lcs
b.uni.lu/
LCSB GitLab: https://git
-r3la
b.uni.lu/
HPC: https://hpc.uni.lu/
...
...
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