Commit 4df810ed authored by Nene Barry's avatar Nene Barry
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2021-07-27_IT101-DM

parent 3e19938a
# Access Management
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## UNI-LU Account
* Mails services including web mail: <a href="https://owa.uni.lu" style="color:blue; font-size:0.8em;">owa.uni.lu</a>
* Microsoft Office & Teams: <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>
* SAP services: <a href="https://fiori.uni.lu/fiori" style="color:blue; font-size:0.8em;">fiori.uni.lu/fiori</a>
* University's Intranet: <a href="https://intranet.uni.lux" style="color:blue; font-size:0.8em;">intranet.uni.lux</a>
* All remote work services : Webex, Slack...
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## LUMS Account
* go to <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>: make a request and go to <a href="https://lcsb-cdc-lums-02.uni.lu" style="color:blue; font-size:0.8em;">lums.uni.lu</a> to active your account upon receiving credentials
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<img src="slides/img/access.png" height="400px">
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<img src="slides/img/lums.png" height="400px">
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* Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a>
* R3 Gitlab: <a href="https://git-r3lab.uni.lu" style="color:blue; font-size:0.8em;">git-r3lab.uni.lu</a>
* Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a>
* LCSB Wiki page, Webdav, LCSB Analytics page
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../../2021-04-20_IT101-DM/slides/code_versioning.md
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../../2021-04-20_IT101-DM/slides/data-housekeeping.md
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../../2021-04-20_IT101-DM/slides/data-introduction.md
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../../2021-04-20_IT101-DM/slides/data_flow.md
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# Some practical recommandations
* Plan your data walking along the data life cycle
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<img align="middle" height="300px" src="slides/img/rdm-cycle.png">
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* Use data management tools:
* DMPonline <a href="https://dmponline.elixir-luxembourg.org/" style="color:blue; font-size:0.8em;">https://dmponline.elixir-luxembourg.org/</a>
<img src="slides/img/dmponline_logo.png" height="50px">
* DS Wizard <a href="https://learning.ds-wizard.org/" style="color:blue; font-size:0.8em;">https://learning.ds-wizard.org/</a>
<img src="slides/img/dsw_logo.png" height="100px">
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* Annotate your data and code using Ontologies and standardised metadata
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../../2021-04-20_IT101-DM/slides/fair-principles.md
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../../2021-04-20_IT101-DM/slides/howtos.md
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../../2021-04-20_IT101-DM/slides/img
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# IT101 - Working with computers
<br>IT101 - Working with computers<br>
## July 27th, 2021
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<img src="theme/img/lcsb_bg.png">
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<img src="slides/img/r3-training-logo.png" height="200px">
<br><br><br><br>
<h3></h3>
<br><br><br>
<h4>
Nene Barry<br>
Data Steward<br>
nene.barry@uni.lu<br>
<i>Luxembourg Centre for Systems Biomedicine</i>
</h4>
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../../2021-04-20_IT101-DM/slides/ingestion.md
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../../2021-04-20_IT101-DM/slides/introduction.md
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../../2021-04-20_IT101-DM/slides/list.json
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../../2021-04-20_IT101-DM/slides/overview.md
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# Problem solving
A guide for solving computing issues
1. Express the problem
* Write down what you want to achieve
2. Search for help
* Read **FAQs**, **help pages** and the **official documentation** well before turning to Google
* Use stack exchange, forums and related resources (carefully)
3. Ask an expert
* Submit the problem in writing
* Make the question interesting
# Responsible and Reproducible Research (R<sup>3</sup>)
## What is R<sup>3</sup>?
A multi-facetted change management
process built on 3 pillars:
- R3 pathfinder
- R3 school
- R3 accelerator
Common link module: R3 clinic
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<img src="slides/img/3pillars-full.png">
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<br>
<br>
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Pathfinder - policies, finding optimal data management changes<br>
School - courses, howtos, trainnings<br>
Accelerator - advanced teams and their boost/support, CI/CD setup<br>
Clinic - hands-on, meetings in groups, code review + suggestions<br>
</aside>
## R<sup>3</sup> Training
* LCSB's Monthly Data Management and Data Protection training
* ELIXIR Luxembourg's trainings <br>
https://elixir-luxembourg.org/training
* First steps with R (2021-07-27)
* Statistical tests and statistical learning for omics data (2021-09-14)
* R<sup>3</sup> school Git basics - every 4 months
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Direct newcommers to this monthly training
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# Responsible and Reproducible Research (R<sup>3</sup>)
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<div style="display:block;text-align:center;position:relative;" >
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* Reinhard Schneider
* <img src="slides/img/R3_profile_pictures/reinhard_schneider.png">
* Head of Bioinformatics Core
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* Pinar Alper
* <img src="slides/img/R3_profile_pictures/pinar_alper.png">
* Datasteward
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* Yohan Yarosz</li>
* <img src="slides/img/R3_profile_pictures/yohan_yarosz.png">
* Development
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<div class="profile-container">
* Laurent Heirendt</li>
* <img src="slides/img/R3_profile_pictures/laurent_heirendt.png">
* Git, CI
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* Sarah Peter</li>
* <img src="slides/img/R3_profile_pictures/sarah_peter.png">
* Infrastructure
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<div class="profile-container">
* Valentine Groues</li>
* <img src="slides/img/R3_profile_pictures/valentine_groues.png">
* Development
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* Vilem Ded</li>
* <img src="slides/img/R3_profile_pictures/vilem_ded.png">
* Datasteward
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* Noua Toukourou</li>
* <img src="slides/img/R3_profile_pictures/noua_toukourou.png">
* Infrastructure
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* Alexey Kolodkin</li>
* <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png">
* Datasteward
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* Maharshi Vyas</li>
* <img src="slides/img/R3_profile_pictures/maharshi_vyas.png">
* Infrastructure
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* Nene Barry</li>
* <img src="slides/img/R3_profile_pictures/nene_barry.png">
* Datasteward
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<div class="profile-container">
* Karim Chaouch</li>
* <img src="slides/img/R3_profile_pictures/karim_chaouch.png">
* Development
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* Christophe Trefois
* <img src="slides/img/R3_profile_pictures/christophe_trefois.png">
* R<sup>3</sup> team lead
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../../2021-04-20_IT101-DM/slides/reproducibility.md
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../../2021-04-20_IT101-DM/slides/storage_setup.md
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../../2021-04-20_IT101-DM/slides/thanks.md
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../../2021-04-20_IT101-DM/slides/visualization.md
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