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Created with Raphaël 2.2.02Jun129May28272621191816151412111287423Apr201713430Mar115225Feb23222117161311527Jan2625201611109872131Dec302922211918177652128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug3024Delete temporary files after test completionOS X compatibility fixTest compatibility with OS X improvedAdded distinct_sort_num option to VectorOps for groupBy.Merge remote-tracking branch 'upstream/master'Completed #181, GFF can have extra fields. Also, SVlen in VCF takes max of more than two numbers (as opposed to min)Changed vector copies to referencestypoformattingSetting Release-Version v2.24.0v2.24.0v2.24.0bump docs versionupdate release history for 2.24.0Merge pull request #245 from nkindlon/masterAdded extra unit test for vcf svlen - single # at end of lineAddressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-colon, newline or nullMerge pull request #244 from nkindlon/masterChanged common help to remove -names, -filenames, and -sortout from all tools but intersect and closest.Removed accidental copy in BinTree to fix speedadd note about CLI change for coverageupdate the help for coverage to reflect new role of A versus B.update coverage docstweak testonly set end to 1 if slop is negative and rolls off start of chromMerge pull request #243 from nkindlon/masterAddressed BinTree memory blow-up; -m in fisher (w/ unit tests)Merge pull request #242 from gtamazian/getfasta-fixesShow warning if a FASTA index file is outdatedTests for IUPAC processing fixedMerge pull request #239 from nkindlon/masterFixed build break in CommonHelpFixed some merge errorsFixed sample unit testforgot b.bed in coverage unit testsforgot a.bed in unit tests for coverageChanged help in all tools to use common helpmerge conflictMerge branch 'jmarshall-warnings3'merge conflictsjmarshall-warni…jmarshall-warnings3fix help to reflect interface changemerge cleanup