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Created with Raphaël 2.2.022Jun1785432129May28272621191816151412111287423Apr201713430Mar115225Feb23222117161311527Jan2625201611109872131Dec302922211918177652128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct3029221110Fixed 44: race condition in bgzip for vcf files.Converted complement to PFM with merge-based approach, sorted input enforcedMerge pull request #247 from nkindlon/masterMissing file bug223_d.vcf for intersect unit testFixed Bug 254: stranded merge of BedPlus records w/ strand. Added strand to default output for stranded merge. Added and updated unit tests.Added -mean to coverage w/ unit testDid #147: don't print usage on errors.Added distinct_sort_num and distinct_sort_num desc to VectorOps (and groupBy) and KeyListOps. Added -delim to groupBy.Delete temporary files after test completionOS X compatibility fixTest compatibility with OS X improvedAdded distinct_sort_num option to VectorOps for groupBy.Merge remote-tracking branch 'upstream/master'Completed #181, GFF can have extra fields. Also, SVlen in VCF takes max of more than two numbers (as opposed to min)Changed vector copies to referencestypoformattingSetting Release-Version v2.24.0v2.24.0v2.24.0bump docs versionupdate release history for 2.24.0Merge pull request #245 from nkindlon/masterAdded extra unit test for vcf svlen - single # at end of lineAddressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-colon, newline or nullMerge pull request #244 from nkindlon/masterChanged common help to remove -names, -filenames, and -sortout from all tools but intersect and closest.Removed accidental copy in BinTree to fix speedadd note about CLI change for coverageupdate the help for coverage to reflect new role of A versus B.update coverage docstweak testonly set end to 1 if slop is negative and rolls off start of chromMerge pull request #243 from nkindlon/masterAddressed BinTree memory blow-up; -m in fisher (w/ unit tests)Merge pull request #242 from gtamazian/getfasta-fixesShow warning if a FASTA index file is outdatedTests for IUPAC processing fixedMerge pull request #239 from nkindlon/masterFixed build break in CommonHelpFixed some merge errorsFixed sample unit test