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Created with Raphaël 2.2.04Apr30Mar115225Feb23222117161311527Jan2625201611109872131Dec302922211918177652128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013revcomp support for IUPACMerge pull request #204 from nkindlon/masterChanged -nonamecheck to warning only, added to help for map, closest, jaccardAddressed bug #208; seg fault when VCF doesn't have SVLEN for imprecise variants.adds CPPFLAGS to all compilation targetsUpdate README.mdAdded -wb and -wo to subtract helpadded unit tests for -sorted and multiple databases.First check-in for new version of subtractMerge pull request #203 from nkindlon/masterAdded unit test for closest to check -header optionMerge pull request #202 from nkindlon/masterMerge remote-tracking branch 'upstream/master'Fixed bug for -nonamecheck, added help, unit testenable -header for closest.Merge pull request #201 from nkindlon/masterAdded first and last to help options for -oupdate docs for 2.23.0Setting Release-Version v2.23.0v2.23.0v2.23.0Merge pull request #194 from jayhesselberth/reverse-windowsall tests passtest stubs; ``-n`` is excepting nowtest stub; refactor num_window calculationfix param parsing; add 1 to win numberclean compile, need to testMerge pull request #190 from nkindlon/masterFixed context error that broke mergeforgot new test files for intersect unit testsbug fixes for kclosest sorted output, 0 length records, and map a vs b file with multi-dbsMerge pull request #179 from nkindlon/masterformattingdeprecate -abam and update help to show that -a supports BAM[BUG] -s is not required with -nCahnged Closest's RecDistList class to not use mapyet another merge erroranother merge errorforgot context MakefileMerge error correctionssrc/utils/Contexts/ContextBase.cppFixing merge errors