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Created with Raphaël 2.2.014Aug824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126228Jan2723191110876543130Dec29try reqs fileadd pybedtools req. for docsadd plot_directiveno need for setup.py?try Mock()try Mock()menu typoadded -split, -s, -S, -f, -r support to multicovtypo in closest helpfix flanks for zerlonegth features.use correct Makefilenumpy for rtdnumpy for rtdnumpy for rtdnumpy for rtdreorg for rtdadd setup.py. for venvadd pip reqs. in hopes of mpl support on rtdadd pip reqs. in hopes of mpl support on rtdtrying to suppor mpltrying to suppor mplremove redundancy in conf.pyadd plotting to conf.pyintersect docsinclude htmladded docs/_build. working on plots via @dalerfirst cut at sphinx-based docsslightly better randomizationreset each bedpeno need for flanks to the left of chrom.startadded shuffle logic for BEDPEadded -A option to subtract entire interval when any overlapAllow user to force closest interval to have different name (-N)allow \# in chrom name, just not at beg. of line (header)typo.print bedpe record immediately after unpaired read.Inital screen for -split overlaps should include the full span of A_iallow uint32 or int32 -tagscatch missing chroms for mapped BAM alignments. warn, don't out_of_range()correct missing tab in annotate's header