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Created with Raphaël 2.2.05Dec2128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816Correcting merge conflicts in NewChromsweep.h and .cppDetect differently ordered files in chromsweep and closest. Merged Fisher changes.Corrected error in reporting amount of overlap (issue #150)update NewChromSweep signature to support fisher. May have conflicts with @nkindlon's upcoming changes. Will resolve then.Merge branch 'brentp-fisher-include'merge conflicts. integrate @brentp's nice improvments to fisher.brentp-fisher-i…brentp-fisher-includeMerge pull request #149 from daler/masterfix formatting of fisher tabletuning, testing and docs for fisheradd -m option to merge intervalsprevent < 0 in n21scripts for comparing to shuffledchange fisher to use numbers of intervals rather than bases of overlapreorganize contingency tableMerge branch 'master' of https://github.com/arq5x/bedtools2better tutorialMerge pull request #146 from nkindlon/masterrestore TOCadded tutorialadded -prec option, default 10. Updated unit tests for merge, map, jaccard. Accept stdin by default in merge.add tutorial to docsMerge branch 'master' of https://github.com/arq5x/bedtools2restore defaukt precision in groupbyMerge pull request #143 from arjanvandervelde/patch-1changed compare function to have "unsigned int"Merge pull request #142 from wookietreiber/wip-make-install-targetadds make install targetupdate docs versiondoc tweaksSetting Release-Version v2.22.0v2.22.0v2.22.0Merge pull request #139 from nkindlon/masterVcfRecord code cleanup, add intersect unit test test for VCF SV's.Read VCF struct vars length from SVLEN tag instead of using length of varRef fieldFixed bug133, missing intersection of zero length recordsFixed bug 100, allowing scientific notation for coords, not returning INT_MIN for invalid numbersmerge conflictsnkindlon-master2nkindlon-master2Including files for minor fixes omitted in yesterday's check-inFixed one more bug with tie mode resolution when using mdb's.Corrections and unit tests for closest -D option.cleanup