Skip to content
Snippets Groups Projects
Select Git revision
  • brentp-fisher-include
  • jmarshall-warnings3
  • map-pfm
  • master default
  • merge-assume-stdin
  • nkindlon-master
  • nkindlon-master2
  • pfm_merge
  • v2.24.0
  • v2.23.0
  • v2.22.1
  • v2.22.0
  • v2.21.0
  • v2.20.1
  • v2.20.0
  • v2.19.1
  • v2.19.0
  • v2.18.2
  • v2.18.1
  • v2.18.0
20 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.022Dec211918177652128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan292827Fixed bug157: ties not prevented by -iu/-idallow closest ties that don't overlap.Merge pull request #152 from nkindlon/masterMerge pull request #151 from tleonardi/masterRemoved test debugging files from repositoryRemoved large closest tests from repositoryMore sort order unit tests for chromsweep and closest; bug fixes and minor enhancementsfixes to tutorial[BUG] fix for issue #140. chromosome boundaries not properly handled when slop values are negative. Thanks to @acdaugherty for the catch.Fix for issue #145. -f was incorrectly set to 0.0 when using -labels, -intervals, or -names.Issue 123. Correct genomecov glyph. Thanks to @tdhock for the catch.[BUG] Fix for issue #153. makewindows -s should not be required with -b.Forgot a new test file for closestMerge branch 'master' of https://github.com/nkindlon/bedtools2Bug fixes for closest and bug 155Fix for issue #155changes for request #125: return non-zero on errors.Added tleonardi's changes for bug 150 re: overlap bases with -split in intersectFix for bug 150, closest hangs with -d and tie first modeCleaned up error message for sort order detection of missing chromUpdated jaccard unit test to reflect chromsweep changeCorrecting merge conflicts in NewChromsweep.h and .cppDetect differently ordered files in chromsweep and closest. Merged Fisher changes.Corrected error in reporting amount of overlap (issue #150)update NewChromSweep signature to support fisher. May have conflicts with @nkindlon's upcoming changes. Will resolve then.Merge branch 'brentp-fisher-include'merge conflicts. integrate @brentp's nice improvments to fisher.brentp-fisher-i…brentp-fisher-includeMerge pull request #149 from daler/masterfix formatting of fisher tabletuning, testing and docs for fisheradd -m option to merge intervalsprevent < 0 in n21scripts for comparing to shuffledchange fisher to use numbers of intervals rather than bases of overlapreorganize contingency tableMerge branch 'master' of https://github.com/arq5x/bedtools2better tutorialMerge pull request #146 from nkindlon/masterrestore TOCadded tutorial