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R3
legacy
bedtools2
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22b79456d82e4ce337b28b8d40049fc981e1f4c3
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8
brentp-fisher-include
jmarshall-warnings3
map-pfm
master
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v2.24.0
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v2.21.0
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Update conf.py
Update README.md
Setting Release-Version v2.22.1
v2.22.1
v2.22.1
fix tutorial makefile
update help messages.
[DOC] update docs for closest and intersect.
Merge branch 'master' of https://github.com/arq5x/bedtools2
Merge pull request #165 from nkindlon/master
updates to closest docs
Merge branch 'master' of https://github.com/nkindlon/bedtools2
Fixed bug164, closest runs slower with -id
goof in mdb -k 2 example.
bigger font
change order
typo
updates to closest's docs
fix conflict
Merge pull request #163 from nkindlon/master
Fixed bug157: ties not prevented by -iu/-id
allow closest ties that don't overlap.
Merge pull request #152 from nkindlon/master
Merge pull request #151 from tleonardi/master
Removed test debugging files from repository
Removed large closest tests from repository
More sort order unit tests for chromsweep and closest; bug fixes and minor enhancements
fixes to tutorial
[BUG] fix for issue #140. chromosome boundaries not properly handled when slop values are negative. Thanks to @acdaugherty for the catch.
Fix for issue #145. -f was incorrectly set to 0.0 when using -labels, -intervals, or -names.
Issue 123. Correct genomecov glyph. Thanks to @tdhock for the catch.
[BUG] Fix for issue #153. makewindows -s should not be required with -b.
Forgot a new test file for closest
Merge branch 'master' of https://github.com/nkindlon/bedtools2
Bug fixes for closest and bug 155
Fix for issue #155
changes for request #125: return non-zero on errors.
Added tleonardi's changes for bug 150 re: overlap bases with -split in intersect
Fix for bug 150, closest hangs with -d and tie first mode
Cleaned up error message for sort order detection of missing chrom
Updated jaccard unit test to reflect chromsweep change
Correcting merge conflicts in NewChromsweep.h and .cpp
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