Commits · 345a1f214a84b31c06c21c5aa1b3701d150d0365 · R3 / legacy / bedtools2

Jun 06, 2012
- regression tests for -abam w/ [-c | -wao | -wo] · 345a1f21
  Aaron authored 12 years ago
  
  345a1f21
- -wo -wao -c with -abam force BED output. Thanks to @agordon. · a1f44cf7
  Aaron authored 12 years ago
  
  a1f44cf7
May 23, 2012
- genome file drives BAM header order in bedtobam · 9c98518f
  Aaron authored 12 years ago
  
  9c98518f
May 21, 2012
- fix off-by-one error in calc. -d for closest · 13dd59af
  Aaron authored 12 years ago
  
  13dd59af
May 15, 2012
- prefer empty() over size() · 09eb206e
  Aaron authored 12 years ago
  
  09eb206e
- safely handle empty input · 601760a4
  Aaron authored 12 years ago
  
  601760a4
- handle unaligned BAMs with -v · 8c626811
  Aaron authored 12 years ago
  
  8c626811
Apr 26, 2012
- remove extraneous .o · acf2ec5e
  Aaron authored 12 years ago
  
  acf2ec5e
Apr 03, 2012
- fixed logic bug in bedtobam's -bed12 mode. · 0e2b20ae
  Aaron authored 12 years ago
  
  0e2b20ae
Mar 31, 2012
- Merge pull request #20 from agordon/feature/makewindows_name_fix · 74caf83d
  Aaron Quinlan authored 12 years ago
  
  WindowMaker: bugfix with using "srcwinnum" + genome
  74caf83d
Mar 30, 2012
- WindowMaker: bugfix with using "srcwinnum" + genome · e363273b
  Assaf Gordon authored 12 years ago
  
  e363273b
- Setting Release-Version v2.16.2 · 5e19e19b
  Aaron authored 12 years ago
  
  5e19e19b
- support for bedtools existing somewhere other than PATH · 65ceb1f5
  Aaron authored 12 years ago
  
  65ceb1f5
- add omitted test dirs for "make test" · 64ed292d
  Aaron authored 12 years ago
  
  64ed292d
Mar 21, 2012
- fiddle w/ Makefile · 17053b8d
  Aaron authored 13 years ago
  
  17053b8d
- twiddle Makefile · eafbbd07
  Aaron authored 13 years ago
  
  eafbbd07
- Makefile tweak · e481a421
  Aaron authored 13 years ago
  
  e481a421
Mar 13, 2012
- Setting Release-Version v2.16.1 · d6fbc6af
  Aaron authored 13 years ago
  
  d6fbc6af
- Setting Release-Version v2.16.0 · 34a94247
  Aaron authored 13 years ago
  
  34a94247
- tweaks to bamtofastq · caaf42ea
  Aaron authored 13 years ago
  
  caaf42ea
Mar 12, 2012
- HELP: groupby -full uses first ine in group · 4ba5f455
  Aaron authored 13 years ago
  
  4ba5f455
Mar 09, 2012
- Setting Release-Version v2.16.0 · 53b4d8ce
  Aaron authored 13 years ago
  
  53b4d8ce
- added @agordon's new versioning system · 4c48f9a2
  Aaron authored 13 years ago
  
  4c48f9a2
- auto-version: fix missing git detection · 8284dfb0
  Assaf Gordon authored 13 years ago
  
  8284dfb0
- wrong includes · 58063534
  Aaron authored 13 years ago
  
  58063534
- old version file · bd70609a
  Aaron authored 13 years ago
  
  bd70609a
- autoversion: fix typo in git directory name · 29c3f995
  Assaf Gordon authored 13 years ago
  
  29c3f995
- go back to gitversion · b8732891
  Aaron authored 13 years ago
  
  b8732891
- add new bamtofastq tool. · 6c5a7ead
  Aaron authored 13 years ago
  
  6c5a7ead
- Second attemp at automatic versioning system. · f6ca38cf
  Assaf Gordon authored 13 years ago
  
  Handles missing ".git" repository, and GitHub's "Download as ZIP" builds
  f6ca38cf
- v 2.16.0 · a5cfc589
  Aaron authored 13 years ago
  
  a5cfc589
- git point version · 1205b8c9
  Aaron authored 13 years ago
  
  1205b8c9
- git point version · bcf383fa
  Aaron authored 13 years ago
  
  bcf383fa
- track version_git.h · 0aa4ef1e
  Aaron authored 13 years ago
  
  0aa4ef1e
- s/gitversion/version/ · b283aca0
  Aaron authored 13 years ago
  
  b283aca0
- make gitversion optional · 477a1c8d
  Aaron authored 13 years ago
  
  477a1c8d
- Added -C (case-insensitive) matching to nucBed. · 574b9349
  Aaron authored 13 years ago
  
  574b9349
Mar 07, 2012
- expand now handles gzipped files w/o .gz extension. · dd037684
  Aaron authored 13 years ago
  
  dd037684
Feb 28, 2012
- Merge pull request #18 from agordon/feature/makefile_debug · bb393ba8
  Aaron Quinlan authored 13 years ago
  
  Makefile: add DEBUG compiler option.
  bb393ba8
- correct -abam/-wb/-bed warning · 70eeaf79
  Aaron authored 13 years ago
  
  70eeaf79