Commits · 0e2b20aec3269d9a2a95d51c6117d306a1a2c9bf · R3 / legacy / bedtools2

Apr 03, 2012
- fixed logic bug in bedtobam's -bed12 mode. · 0e2b20ae
  Aaron authored 13 years ago
  
  0e2b20ae
Mar 31, 2012
- Merge pull request #20 from agordon/feature/makewindows_name_fix · 74caf83d
  Aaron Quinlan authored 13 years ago
  
  WindowMaker: bugfix with using "srcwinnum" + genome
  74caf83d
Mar 30, 2012
- WindowMaker: bugfix with using "srcwinnum" + genome · e363273b
  Assaf Gordon authored 13 years ago
  
  e363273b
- Setting Release-Version v2.16.2 · 5e19e19b
  Aaron authored 13 years ago
  
  5e19e19b
- support for bedtools existing somewhere other than PATH · 65ceb1f5
  Aaron authored 13 years ago
  
  65ceb1f5
- add omitted test dirs for "make test" · 64ed292d
  Aaron authored 13 years ago
  
  64ed292d
Mar 21, 2012
- fiddle w/ Makefile · 17053b8d
  Aaron authored 13 years ago
  
  17053b8d
- twiddle Makefile · eafbbd07
  Aaron authored 13 years ago
  
  eafbbd07
- Makefile tweak · e481a421
  Aaron authored 13 years ago
  
  e481a421
Mar 13, 2012
- Setting Release-Version v2.16.1 · d6fbc6af
  Aaron authored 13 years ago
  
  d6fbc6af
- Setting Release-Version v2.16.0 · 34a94247
  Aaron authored 13 years ago
  
  34a94247
- tweaks to bamtofastq · caaf42ea
  Aaron authored 13 years ago
  
  caaf42ea
Mar 12, 2012
- HELP: groupby -full uses first ine in group · 4ba5f455
  Aaron authored 13 years ago
  
  4ba5f455
Mar 09, 2012
- Setting Release-Version v2.16.0 · 53b4d8ce
  Aaron authored 13 years ago
  
  53b4d8ce
- added @agordon's new versioning system · 4c48f9a2
  Aaron authored 13 years ago
  
  4c48f9a2
- auto-version: fix missing git detection · 8284dfb0
  Assaf Gordon authored 13 years ago
  
  8284dfb0
- wrong includes · 58063534
  Aaron authored 13 years ago
  
  58063534
- old version file · bd70609a
  Aaron authored 13 years ago
  
  bd70609a
- autoversion: fix typo in git directory name · 29c3f995
  Assaf Gordon authored 13 years ago
  
  29c3f995
- go back to gitversion · b8732891
  Aaron authored 13 years ago
  
  b8732891
- add new bamtofastq tool. · 6c5a7ead
  Aaron authored 13 years ago
  
  6c5a7ead
- Second attemp at automatic versioning system. · f6ca38cf
  Assaf Gordon authored 13 years ago
  
  Handles missing ".git" repository, and GitHub's "Download as ZIP" builds
  f6ca38cf
- v 2.16.0 · a5cfc589
  Aaron authored 13 years ago
  
  a5cfc589
- git point version · 1205b8c9
  Aaron authored 13 years ago
  
  1205b8c9
- git point version · bcf383fa
  Aaron authored 13 years ago
  
  bcf383fa
- track version_git.h · 0aa4ef1e
  Aaron authored 13 years ago
  
  0aa4ef1e
- s/gitversion/version/ · b283aca0
  Aaron authored 13 years ago
  
  b283aca0
- make gitversion optional · 477a1c8d
  Aaron authored 13 years ago
  
  477a1c8d
- Added -C (case-insensitive) matching to nucBed. · 574b9349
  Aaron authored 13 years ago
  
  574b9349
Mar 07, 2012
- expand now handles gzipped files w/o .gz extension. · dd037684
  Aaron authored 13 years ago
  
  dd037684
Feb 28, 2012
- Merge pull request #18 from agordon/feature/makefile_debug · bb393ba8
  Aaron Quinlan authored 13 years ago
  
  Makefile: add DEBUG compiler option.
  bb393ba8
- correct -abam/-wb/-bed warning · 70eeaf79
  Aaron authored 13 years ago
  
  70eeaf79
Feb 24, 2012

Makefile: extract BamTools' API creating to a separate target. · 84c19503

Assaf Gordon authored 13 years ago

Ensures the BamTools' API files are created first (before any compilation occurs).
This allows parallel builds with "make -j 4".

84c19503

Makefile: extract the sub-dir make into targets. · 915746cb

Assaf Gordon authored 13 years ago

Allows parallel make with "-j N" .
Recommended in "Managing Projects with GNU Make", chapter 6, page 109.

915746cb

Feb 23, 2012
- Makefile: add DEBUG compiler option. · 3db23b18
  Assaf Gordon authored 13 years ago
  
  To build a debug version, run "make DEBUG=1"
  3db23b18
Feb 22, 2012
- change -leftJoin to -loj. Improve help for intersect · 5e06d44f
  Aaron authored 13 years ago
  
  5e06d44f
- add -leftjoin option to bedtools intersect · 58501fa6
  Aaron authored 13 years ago
  
  58501fa6
- expand now supports - for stdin · f3d2e583
  Aaron authored 13 years ago
  
  f3d2e583
- groupby now supports - for stdin · 6ce12cfc
  Aaron authored 13 years ago
  
  6ce12cfc
Feb 19, 2012
- make stand-alone tool for expand. · 0fd0d47b
  Aaron authored 13 years ago
  
  0fd0d47b