Added 12 new tests to print header for files with large header from...

Added 12 new tests to print header for files with large header from uncompressed files, gzip, and bgzip as file, redirect, pipe and fifo.

test/intersect/new_test-intersect.sh

@@ -433,4 +433,124 @@ check obs exp
 rm obs exp
 
 
+###########################################################
+#  Test intersection of a with large header as bed from file 
+#  vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t36...\c"
+$BT intersect -a a_withLargeHeader.bed -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bed from 
+#  redirect vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t37...\c"
+$BT intersect -a - -b b.bed < a_withLargeHeader.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bed from pipe
+#  vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t38...\c"
+cat a_withLargeHeader.bed | $BT intersect -a - -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bed from fifo
+#  vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t39...\c"
+$BT intersect -a <(cat a_withLargeHeader.bed) -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as gzipped from
+#  file vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t40...\c"
+$BT intersect -a a_withLargeHeader_gzipped.bed.gz -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as gzipped from
+#  redirect vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t41...\c"
+$BT intersect -a - -b b.bed < a_withLargeHeader_gzipped.bed.gz -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as gzipped from
+#  pipe vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t42...\c"
+cat a_withLargeHeader_gzipped.bed.gz | $BT intersect -a - -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as gzipped from
+#  fifo vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t43...\c"
+$BT intersect -a <(cat a_withLargeHeader_gzipped.bed.gz) -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bgzipped from
+#  file vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t44...\c"
+$BT intersect -a a_withLargeHeader_bgzipped.bed.gz -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bgzipped from
+#  redirect vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t45...\c"
+$BT intersect -a - -b b.bed < a_withLargeHeader_bgzipped.bed.gz -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bgzipped from
+#  pipe vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t46...\c"
+cat a_withLargeHeader_bgzipped.bed.gz | $BT intersect -a - -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+
+###########################################################
+#  Test intersection of a with large header as bgzipped from
+#  fifo vs b as bed from file, and print header
+############################################################
+echo "    intersect.new.t47...\c"
+$BT intersect -a <(cat a_withLargeHeader_bgzipped.bed.gz) -b b.bed -header > obs
+check obs aWithHeaderVsB.txt
+rm obs
+
+