src/annotateBed/Makefile

src/annotateBed/annotateMain.cpp

src/bamToBed/Makefile

src/bamToBed/bamToBed.cpp

src/bed12ToBed6/Makefile

src/bed12ToBed6/bed12ToBed6.cpp

src/bedToBam/Makefile

src/bedToBam/bedToBam.cpp

src/bedToIgv/Makefile

src/bedToIgv/bedToIgv.cpp

src/bedpeToBam/Makefile

src/bedpeToBam/bedpeToBam.cpp

src/closestBed/Makefile

src/closestBed/closestMain.cpp

src/complementBed/Makefile

src/complementBed/complementMain.cpp

src/coverageBed/Makefile

src/coverageBed/coverageMain.cpp

src/fastaFromBed/Makefile

src/fastaFromBed/fastaFromBedMain.cpp