Commit e23d18d9 authored by Aaron's avatar Aaron
Browse files

Removed groupBy from the BEDTools distribution.

It now lives in the "filo" package.
parent 4a64280e
......@@ -22,8 +22,8 @@ SUBDIRS = $(SRC_DIR)/annotateBed \
$(SRC_DIR)/complementBed \
$(SRC_DIR)/coverageBed \
$(SRC_DIR)/fastaFromBed \
$(SRC_DIR)/fjoin \
$(SRC_DIR)/genomeCoverageBed \
$(SRC_DIR)/groupBy \
$(SRC_DIR)/intersectBed \
$(SRC_DIR)/linksBed \
$(SRC_DIR)/maskFastaFromBed \
......
UTILITIES_DIR = ../utils/
OBJ_DIR = ../../obj/
BIN_DIR = ../../bin/
# -------------------
# define our includes
# -------------------
INCLUDES = -I$(UTILITIES_DIR)/tabFile/ -I$(UTILITIES_DIR)/lineFileUtilities/ -I$(UTILITIES_DIR)/version/ -I$(UTILITIES_DIR)/gzstream/ -I$(UTILITIES_DIR)/fileType/
# ----------------------------------
# define our source and object files
# ----------------------------------
SOURCES= groupBy.cpp
OBJECTS= $(SOURCES:.cpp=.o)
_EXT_OBJECTS=tabFile.o lineFileUtilities.o gzstream.o fileType.o
EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
PROGRAM= groupBy
all: $(PROGRAM)
.PHONY: all
$(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
@echo " * linking $(PROGRAM)"
@$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ $(LIBS)
$(BUILT_OBJECTS): $(SOURCES)
@echo " * compiling" $(*F).cpp
@$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(INCLUDES)
$(EXT_OBJECTS):
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/tabFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
clean:
@echo "Cleaning up."
@rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
.PHONY: clean
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