src/intersectFile/intersectFile.h

src/intersectFile/intersectMain.cpp

src/mapFile/mapFile.h

src/mapFile/mapMain.cpp

src/nekSandbox1/nekSandboxMain.cpp

src/regressTest/RegressTest.h

src/sampleFile/SampleFile.h

src/subtractBed/subtractBed.cpp

src/utils/BinTree/BinTree.h

src/utils/Fasta/Fasta.cpp

src/utils/FileRecordTools/FileReaders/BamFileReader.h

src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h

src/utils/FileRecordTools/FileReaders/FileReader.h

src/utils/FileRecordTools/FileReaders/InputStreamMgr.h

...leRecordTools/FileReaders/SingleLineDelimTextFileReader.h

...RecordTools/FileReaders/SingleLineDelimTransferBuffer.cpp

...leRecordTools/FileReaders/SingleLineDelimTransferBuffer.h

src/utils/FileRecordTools/FileRecordMgr.h

src/utils/FileRecordTools/Records/BlockMgr.h

src/utils/FileRecordTools/Records/Record.h