Added working version of pairToPair and sanity checked all tools versus previous version.
Ready for publication release. Checked all of the help messages. Cleaned up some inconsistencies.
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- FAQ 0 additions, 13 deletionsFAQ
- Makefile 1 addition, 1 deletionMakefile
- README 20 additions, 16 deletionsREADME
- src/complementBed/complementMain.cpp 5 additions, 0 deletionssrc/complementBed/complementMain.cpp
- src/coverageBed/coverageBed.cpp 1 addition, 1 deletionsrc/coverageBed/coverageBed.cpp
- src/coverageBed/coverageMain.cpp 4 additions, 2 deletionssrc/coverageBed/coverageMain.cpp
- src/fastaFromBed/fastaFromBedMain.cpp 6 additions, 13 deletionssrc/fastaFromBed/fastaFromBedMain.cpp
- src/genomeCoverageBed/genomeCoverageMain.cpp 5 additions, 4 deletionssrc/genomeCoverageBed/genomeCoverageMain.cpp
- src/maskFastaFromBed/maskFastaFromBedMain.cpp 8 additions, 13 deletionssrc/maskFastaFromBed/maskFastaFromBedMain.cpp
- src/mergeBed/mergeMain.cpp 5 additions, 5 deletionssrc/mergeBed/mergeMain.cpp
- src/pairToBed/Makefile 46 additions, 0 deletionssrc/pairToBed/Makefile
- src/pairToBed/pairToBed.cpp 322 additions, 0 deletionssrc/pairToBed/pairToBed.cpp
- src/pairToBed/pairToBed.h 46 additions, 0 deletionssrc/pairToBed/pairToBed.h
- src/pairToBed/pairToBedMain.cpp 156 additions, 0 deletionssrc/pairToBed/pairToBedMain.cpp
- src/pairToPair/pairToPair.cpp 70 additions, 78 deletionssrc/pairToPair/pairToPair.cpp
- src/pairToPair/pairToPair.h 5 additions, 1 deletionsrc/pairToPair/pairToPair.h
- src/pairToPair/pairToPairMain.cpp 11 additions, 5 deletionssrc/pairToPair/pairToPairMain.cpp
- src/shuffleBed/shuffleBedMain.cpp 5 additions, 5 deletionssrc/shuffleBed/shuffleBedMain.cpp
- src/slopBed/slopBedMain.cpp 9 additions, 9 deletionssrc/slopBed/slopBedMain.cpp
- src/subtractBed/subtractMain.cpp 1 addition, 1 deletionsrc/subtractBed/subtractMain.cpp
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