Commit 7f513c62 authored by Aaron's avatar Aaron
Browse files

Changes to RELEASE_HISTORY and VERSION and chmods

parent df065ac7
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
Version 2.8.0 (July-05-2010)
Version 2.8.2 (July-18-2010)
1. Fixed a bug in bedFile.h preventing GFF strands from being read properly.
2. Fixed a bug in intersectBed that occasionally caused spurious overlaps between BAM alignments and BED features.
3. Fixed bug in intersectBed causing -r to not report the same result when files are swapped.
4. Added checks to groupBy to prevent the selection of improper opCols and groups.
5. Fixed various compilation issues, esp. for groupBy, bedToBam, and bedToIgv.
6. Updated the usage statements to reflect bed/gff/vcf support.
7. Added new fileType functions for auto-detecting gzipped or regular files. Thanks to Assaf Gordon.
Version 2.8.1 (July-05-2010)
1. Added bedToIgv.
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File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
......@@ -35,6 +35,7 @@ $(EXT_OBJECTS):
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
clean:
@echo "Cleaning up."
......
File mode changed from 100755 to 100644
......@@ -37,7 +37,8 @@ $(EXT_OBJECTS):
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/genomeFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
@$(MAKE) -C $(UTILITIES_DIR)/fileType/
clean:
@echo "Cleaning up."
@rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
......
File mode changed from 100755 to 100644
......@@ -36,7 +36,8 @@ $(EXT_OBJECTS):
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/genomeFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
clean:
@echo "Cleaning up."
@rm -f $(OBJ_DIR)/* $(BIN_DIR)/*
......
File mode changed from 100755 to 100644
......@@ -32,6 +32,7 @@ $(EXT_OBJECTS):
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/gzstream/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/bedFile/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/lineFileUtilities/
@$(MAKE) --no-print-directory -C $(UTILITIES_DIR)/fileType/
clean:
@echo "Cleaning up."
......
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
File mode changed from 100755 to 100644
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