src/bamToBed/Makefile

src/bamToBed/bamToBed.cpp

src/coverageBed/Makefile

src/genomeCoverageBed/Makefile

src/intersectBed/Makefile

src/pairToBed/Makefile

src/utils/BamTools/BGZF.cpp

src/utils/BamTools/BGZF.h

src/utils/BamTools/BamAux.h

src/utils/BamTools/BamIndex.cpp

src/utils/BamTools/BamIndex.h

src/utils/BamTools/BamMultiReader.cpp

src/utils/BamTools/BamMultiReader.h

src/utils/BamTools/BamReader.cpp

src/utils/BamTools/BamReader.h

src/utils/BamTools/BamWriter.cpp

src/utils/BamTools/BamWriter.h

src/utils/BamTools/Makefile

src/windowBed/Makefile