src/annotateBed/annotateBed.cpp

src/bed12ToBed6/bed12ToBed6.cpp

src/bedToBam/bedToBam.cpp

src/bedToIgv/bedToIgv.cpp

src/closestBed/closestBed.cpp

src/coverageBed/coverageBed.cpp

src/fastaFromBed/fastaFromBed.cpp

src/flankBed/flankBed.cpp

src/genomeCoverageBed/genomeCoverageBed.cpp

src/intersectBed/intersectBed.cpp

src/linksBed/linksBed.cpp

src/multiBamCov/multiBamCov.cpp

src/nucBed/nucBed.cpp

src/shuffleBed/shuffleBed.cpp

src/slopBed/slopBed.cpp

src/subtractBed/subtractBed.cpp

src/utils/bedFile/bedFile.cpp

src/utils/bedFile/bedFile.h

src/utils/chromsweep/chromsweep.cpp

src/utils/chromsweep/chromsweep.h