Added UCSC browser header support. Fixed bug in mergeBed. Release 2.0.1

55e9e431 · Aaron · d48ba2fb · 55e9e431 · 55e9e431 · 55e9e431
Commit 55e9e431 authored 15 years ago by Aaron
--- a/RELEASE_HISTORY
+++ b/RELEASE_HISTORY
+VERSION 2.0.1
+1. Added the ability to retain UCSC browser track/browser headers in BED files.
 VERSION 2.0
 1.  Sped up the file parsing.  ~10-20% increase in speed.
 2.  Created reportBed() as a common method in the bedFile class.  Cleans up the code quite nicely.

--- a/bedFields
+++ b/bedFields
--- a/bin/closestBed
+++ b/bin/closestBed
--- a/bin/complementBed
+++ b/bin/complementBed
--- a/bin/coverageBed
+++ b/bin/coverageBed
--- a/bin/fastaFromBed
+++ b/bin/fastaFromBed
--- a/bin/genomeCoverageBed
+++ b/bin/genomeCoverageBed
--- a/bin/intersectBed
+++ b/bin/intersectBed
--- a/bin/linksBed
+++ b/bin/linksBed
--- a/bin/mergeBed
+++ b/bin/mergeBed
--- a/bin/peIntersectBed
+++ b/bin/peIntersectBed
--- a/bin/sortBed
+++ b/bin/sortBed
--- a/bin/subtractBed
+++ b/bin/subtractBed
--- a/bin/windowBed
+++ b/bin/windowBed
--- a/gaps.mm9.bed
+++ b/gaps.mm9.bed
--- a/hallUnpublishedCNVs.mm9.bed
+++ b/hallUnpublishedCNVs.mm9.bed
--- a/obj/bedFile.o
+++ b/obj/bedFile.o
--- a/obj/closestBed.o
+++ b/obj/closestBed.o
--- a/obj/coverageBed.o
+++ b/obj/coverageBed.o
--- a/obj/intersectBed.o
+++ b/obj/intersectBed.o