src/closestFile/closestFile.cpp

src/fisher/Fisher.cpp

src/fisher/Fisher.h

src/fisher/Makefile

src/fisher/fisherMain.cpp

src/intersectFile/intersectFile.cpp

src/utils/BinTree/BinTree.cpp

src/utils/Contexts/ContextBase.cpp

src/utils/Contexts/ContextBase.h

src/utils/FileRecordTools/Records/Record.cpp

src/utils/FileRecordTools/Records/Record.h

src/utils/NewChromsweep/CloseSweep.cpp

src/utils/NewChromsweep/CloseSweep.h

src/utils/NewChromsweep/NewChromsweep.cpp

src/utils/NewChromsweep/NewChromsweep.h

test/closest/close-b.bed

test/closest/sortAndNaming/bigTests/2.21_500Kvs500K.txt

test/closest/sortAndNaming/bigTests/2.21_5v5.txt

test/closest/sortAndNaming/bigTests/2.21_chr1.txt

test/closest/sortAndNaming/bigTests/curr500Kvs500K.txt