new unit tests for intersect

46c217fb · nkindlon · 35f181ba · 46c217fb · 46c217fb · 46c217fb
Commit 46c217fb authored 11 years ago by nkindlon
--- a/test/intersect/a.bam
+++ b/test/intersect/a.bam
--- a/test/intersect/aVSb.bam
+++ b/test/intersect/aVSb.bam
--- a/test/intersect/a_bgzipped.bed.gz
+++ b/test/intersect/a_bgzipped.bed.gz
--- a/test/intersect/a_gzipped.bed.gz
+++ b/test/intersect/a_gzipped.bed.gz
--- a/test/intersect/new_test-intersect.sh
+++ b/test/intersect/new_test-intersect.sh
+BT=${BT-../../bin/bedtools}
+check()
+{
+	if diff $1 $2; then
+    	echo ok
+	else
+    	echo fail
+	fi
+}
+###########################################################
+#  Test intersection of a as bed from file vs b as bed from file
+############################################################
+echo "    intersect.t01...\c"
+echo \
+"chr1	100	101	a2	2	-
+chr1	100	110	a2	2	-" > exp
+$BT intersect -a a.bed -b b.bed > obs
+check obs exp
+rm obs exp