First cut at BlockedIntervals class to cleanup spliced BAMs and BED12
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- Makefile 1 addition, 0 deletionsMakefile
- src/bamToBed/Makefile 3 additions, 2 deletionssrc/bamToBed/Makefile
- src/bamToBed/bamToBed.cpp 23 additions, 64 deletionssrc/bamToBed/bamToBed.cpp
- src/bed12ToBed6/Makefile 4 additions, 1 deletionsrc/bed12ToBed6/Makefile
- src/bed12ToBed6/bed12ToBed6.cpp 2 additions, 1 deletionsrc/bed12ToBed6/bed12ToBed6.cpp
- src/coverageBed/Makefile 10 additions, 10 deletionssrc/coverageBed/Makefile
- src/coverageBed/coverageBed.cpp 2 additions, 2 deletionssrc/coverageBed/coverageBed.cpp
- src/coverageBed/coverageBed.h 1 addition, 1 deletionsrc/coverageBed/coverageBed.h
- src/genomeCoverageBed/Makefile 2 additions, 2 deletionssrc/genomeCoverageBed/Makefile
- src/genomeCoverageBed/genomeCoverageBed.cpp 2 additions, 2 deletionssrc/genomeCoverageBed/genomeCoverageBed.cpp
- src/genomeCoverageBed/genomeCoverageBed.h 1 addition, 1 deletionsrc/genomeCoverageBed/genomeCoverageBed.h
- src/intersectBed/Makefile 3 additions, 3 deletionssrc/intersectBed/Makefile
- src/intersectBed/intersectBed.cpp 3 additions, 44 deletionssrc/intersectBed/intersectBed.cpp
- src/intersectBed/intersectBed.h 1 addition, 1 deletionsrc/intersectBed/intersectBed.h
- src/utils/BlockedIntervals/BlockedIntervals.cpp 105 additions, 0 deletionssrc/utils/BlockedIntervals/BlockedIntervals.cpp
- src/utils/BlockedIntervals/BlockedIntervals.h 29 additions, 0 deletionssrc/utils/BlockedIntervals/BlockedIntervals.h
- src/utils/BlockedIntervals/Makefile 35 additions, 0 deletionssrc/utils/BlockedIntervals/Makefile
- src/utils/bedFile/bedFile.cpp 0 additions, 46 deletionssrc/utils/bedFile/bedFile.cpp
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