Format README.md

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README.md

 # comparison-protocols
-This project corresponds to the paper: A comparison of two iPSC differentiation protocols to generate human astrocyte cultures (Mulica et al)
+This project corresponds to the paper: "A comparison of two iPSC differentiation protocols to generate human astrocyte cultures" (Mulica et al.)
 
-#Figure2
-In this folder the codes for analyzing astrocytic morphology are stored, both for Oksanen and Palm astrocytes. 
+## Folder `Figure2`
 
-Subfolder 'oksanen-astrocytes' contains the Matlab codes for analyzing the morphology of Oksanen astrocytes. The Matlab version: 2020a. The corresponding raw data is stored at:
-/mnt/AtlasHCS/YokogawaCV8000Standalone/CellPathfinder/Patrycja/PKM_20210927_gfap_astro_OksanenMorph_20210927_205648/AssayPlate_PerkinElmer_CellCarrierUltra96
+In this folder, the codes for analyzing astrocytic morphology are stored, both for Oksanen and Palm astrocytes. 
+
+Subfolder `oksanen-astrocytes` contains the Matlab codes for analyzing the morphology of Oksanen astrocytes. The Matlab version used was: 2020a.
 
+The corresponding raw data is stored at:
+```
+/mnt/AtlasHCS/YokogawaCV8000Standalone/CellPathfinder/Patrycja/PKM_20210927_gfap_astro_OksanenMorph_20210927_205648/AssayPlate_PerkinElmer_CellCarrierUltra96
 /mnt/AtlasHCS/YokogawaCV8000Standalone/CellPathfinder/Patrycja/PKM_20210927_gfap_astro2_OksanenMorph2_20210927_222659/AssayPlate_PerkinElmer_CellCarrierUltra96
+```
 
-Subfolder 'palm-astrocytes'contains the Matlab codes for analyzing the morphology of Palm astrocytes. The Matlab version: 2020a. The corresponding raw data is stored at:
+Subfolder `palm-astrocytes` contains the Matlab codes for analyzing the morphology of Palm astrocytes. The Matlab version used was: 2020a. The corresponding raw data is stored at:
+```
 /mnt/AtlasHCS/YokogawaCV8000Standalone/CellPathfinder/Patrycja/PKM_20210927_gfap_astro_PalmMorph_20211028_152159/AssayPlate_PerkinElmer_CellCarrierUltra96
+```
 
-Subfolder 'r-scripts' contain R scripts used to summarize the data. The graphs were generated using the summarized data in GraphPad. 
+Subfolder `r-scripts` contain R scripts used to summarize the data. The graphs were generated using the summarized data in GraphPad. 
 
-#Figure3, 4A, B5
+# Folder `Figure3, 4A, B5`
 
 The analysis was performed in R.
-Raw data is stored: bds-02.uni.lux server in the "/mnt/data"
+Raw data is stored at `bds-02.uni.lux` server in directory `/mnt/data`
+
+# Folder `Figure 4C, D, E and S3`
 
-#Figure 4C, D, E and S3
 The analysis was performed in R.