polishing update: LR/SR polishing of LR/hy assemblies and include unpolished
Update the polishing strategy:
- LR assemblies: polish /w LR and SR using
racon
- can ignore
medaka
for now - LR and LR/SR
- contig filtering based on LR only
- can ignore
- hybrid assemblies: polish w/ SR using
racon
- use
--include-unpolished
forracon
!!!