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  • #128
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Issue created Apr 20, 2021 by Valentina Galata@valentina.galataMaintainer10 of 10 checklist items completed10/10 checklist items

utils: ave_gene_cov bug

Fix function ave_gene_cov in utils.py: https://git-r3lab.uni.lu/susheel.busi/ont_pilot_gitlab/-/blob/master/workflow/scripts/utils.py#L284

  1. why using if contig_id != ""?: https://git-r3lab.uni.lu/susheel.busi/ont_pilot_gitlab/-/blob/master/workflow/scripts/utils.py#L299
  2. no ave. cov. for genes/proteins from the last contig because the if statement will not be reached after the end of file
  • fix the code
  • re-create the per-gene coverage result files
  • compare to prev. result files
  • re-run the report workflow
  • re-run the figure workflow
  • update notes
  • add relevant per-gene cov. files to result archive (also update its README)
  • re-create the result archive (update on figshare)
  • re-create the code archive (update on figshare)
  • update figures (if needed) in the manuscript
Edited Apr 21, 2021 by Valentina Galata
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