Dear @laura.denies,
Apologies for the delay.
("test/output_test/logs/test_sample/group_1_plasflow_prediction.log") is attached.group_1_plasflow_prediction.log
The error seems to be in 'PlasFlow.py' this program (TF_Vote_Classifier).
Thanks !!
Dear @laura.denies ,
As I mentioned before, I ran this command below, but failed:
Thanks again.2022-01-26T012424.340103.snakemake.log
Hello @laura.denies,
Just update what I have found. I was using the snakemake software in your conda environment (I mean: ~/miniconda3/envs/PathoFact/bin/snakemake version-5.5.4)
So I run the test data in this command:
It seems to take some time to build the required environment.
I think that if snakemake version is higher that 5, and PathoFact will not work.
I will update my testing if there is anything wrong, thank you for all of your help.
Dear @laura.denies
My conda version is 4.10.3. (and I used miniconda in Linux). Maybe I can try to upgrade my conda.
HTH !!
Thanks for your help !!
Dear @laura.denies,
Recently I was keeping trying your tool PathoFact with the test data provided from you. I installed your tool and dependency according to the instructions from your ReadMe file. However I frequently confronted with such error shown as follows (snakemake.log): I also found the log in "test/output_test/logs/test_sample/VIRSorter_global-phage-signal.log" : [/usr/bin/bash: line 1: wrapper_phage_contigs_sorter_iPlant.pl: command not found]
Do you have any idea about popping up such issue when testing your tool ? Thank You in advance.