breaking changes

_includes/footer.html

@@ -3,8 +3,8 @@
         <div class="footer-col-wrapper">
           <div class="footer-col  footer-col-1">
             <ul class="list-unstyled list-inline">
-              <li><img style="width: 70px" src="{{ site.baseurl }}/img/logoUni.png"></li>
-              <li><img style="width: 140px" src="{{ site.baseurl }}/img/logoLCSB.jpg"></li>
+              <li><img style="width: 70px" src="https://webdav-r3lab-server.uni.lu/public/biocore/logos/logoUni.png"></li>
+              <li><img style="width: 140px" src="https://webdav-r3lab-server.uni.lu/public/biocore/logos/logoLCSB-long.jpg"></li>
             </ul>
           </div>
 

_includes/header.html

@@ -2,8 +2,8 @@
     <nav class="navbar navbar-inverse">
         <div class="container-fluid">
             {% if page.index %}
-                {% assign brand =  page.index | split:":" %}
-                <a class="navbar-brand" href="{{ site.baseurl }}/projects/{{brand[0]}}">{{brand[1]}}</a>
+                {% assign brand =  page.index | split:"$" %}
+                <a class="navbar-brand" href="{{ site.baseurl }}/web/{{brand[0]}}">{{brand[1]}}</a>
             {% endif %}
             <ul class="nav navbar-nav">
             {% if page.nav %}

fetch_projects.sh

@@ -2,7 +2,7 @@
 
 # directory where reside this script (not working if no simlinks are in the path).
 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
-PROJECTS_DIR="$DIR/projects"
+PROJECTS_DIR="$DIR/web"
 
 # read config file passed as input
 while IFS=' ' read -r name url ; do

index.html

 ---
 layout: default
-index: ../:R3lab
+index: ../$R3lab
 nav: https://git-r3lab.uni.lu$Gitlab,https://webdav-r3lab.uni.lu$File Storage,https://docker-r3lab.uni.lu$Docker
 ---
 
@@ -9,56 +9,21 @@ nav: https://git-r3lab.uni.lu$Gitlab,https://webdav-r3lab.uni.lu$File Storage,ht
     <div class="jumbotron">
         <h1>Reproducible Research Results</h1>
         <div class="row marketing">
-          <div class="col-lg-6">
-            <h4>Browse public repositories</h4>
-                              <p><span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>  <a href="/public/biocore">biocore</a></p>
-                              <p><span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>  <a href="/public/R3lab">R3lab</a></p>
-                              <p><span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>  <a href="/public/msp">msp</a></p>
-                          </div>
-        </div>
+          <div class="col-lg-6"></div>
         <div class="row marketing">
-          <div class="col-lg-6">
-            <h4>Private repositories - restricted access</h4>
-                              <p><span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>  <a href="/private/R3">R3</a></p>
-                          </div>
+            <div class="col-lg-6"></div>
         </div>
     </div>
 
-    <div class="well">
-        <p>We provide two types of repositories:<br/>
-              <b>-   Public</b>: Anyone can see and download the data you put there. Useful to share your data with the world.<br/>
-              <b>-   Private</b>: Only allowed people can share data there.
-        </p>
-        <p>If you have question or want to have access <small>(Only people in UNI.lu can ask for write access)</small> <a class="btn btn-sm btn-success" href="mailto:lcsb-sysadmins@uni.lu" role="button">Ask for access</a></p>
+    <div class="jumbotron">
+        <h2>Hosted websites</h2>
+        {% for project in site.pages %}
+           {% if project.type == 'project' %}
+               {% assign index =  project.index | split:"$" %}
+              <p>
+                  <span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>  <a href="/web/{{index[0]}}">{{index[1]}}</a>
+                  {{project.description}}
+           {% endif %}
+        {% endfor %}
     </div>
-
-</div> <!-- /container -->
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-<dl class="dl-horizontal">
-{% for project in site.pages %}
-   {% if project.type == 'project' %}
-    <dt><a class="project-link" href="{{ project.url | prepend: site.baseurl }}">{{ project.title }}</a><dt>
-    <dd>{{project.description}}</dd>
-   {% endif %}
-{% endfor %}
-</dl>
+</div>

web/bootstrap_project_page

+/Users/yohan.jarosz/Documents/LCSB/biocore/bootstrap_project_page
\ No newline at end of file

web/imp

+/Users/yohan.jarosz/Documents/LCSB/biocore/IMP-website
\ No newline at end of file

web/minerva/user guide.md

+---
+layout: page
+title: Minerva
+index: minerva
+type: subpage
+description: "Minerva website"
+nav: user guide,something else
+---