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Commit 732764c5 authored by Yohan Jarosz's avatar Yohan Jarosz
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Initial setup

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.gitignore 0 → 100644
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_site
.sass-cache
/projects/*
!/projects/index.md
_config.yml 0 → 100644
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# Site settings
title: Biocore
description: biocore projects page.
baseurl: "" # the subpath of your site, e.g. /blog/
url: "http://biocore.uni.lu" # the base hostname & protocol for your site
# Build settings
markdown: kramdown
_includes/footer.html 0 → 100644
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<footer class="site-footer">
<div class="footer-col-wrapper">
<div class="footer-col footer-col-1">
<ul class="list-unstyled list-inline">
<li><img style="width: 120px" src="{{ site.baseurl }}/img/logoUNI.png"></li>
<li><img style="width: 250px" src="{{ site.baseurl }}/img/logoLCSB.jpg"></li>
</ul>
</div>
<div class="footer-col footer-col-2">
</div>
<!-- <div class="footer-col footer-col-3">
<p class="text">{{ site.description }}</p>
</div> -->
</div>
</footer>
_includes/head.html 0 → 100644
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<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>{% if page.title %}{{ page.title }}{% else %}{{ site.title }}{% endif %}</title>
<meta name="description" content="{% if page.excerpt %}{{ page.excerpt | strip_html | strip_newlines | truncate: 160 }}{% else %}{{ site.description }}{% endif %}">
<link rel="stylesheet" href="{{ "/css/main.css" | prepend: site.baseurl }}">
<link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
<link rel="alternate" type="application/rss+xml" title="{{ site.title }}" href="{{ "/feed.xml" | prepend: site.baseurl | prepend: site.url }}" />
</head>
_includes/header.html 0 → 100644
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<header class="site-header">
<nav class="navbar navbar-inverse">
<a class="navbar-brand" href="{{ site.baseurl }}/">Biocore</a>
<ul class="nav navbar-nav">
{% for navpage in site.pages %}
{% if navpage.title and navpage.type == 'nav' %}
<li class="{% if page.url contains 'projects'%}active{% endif %}"><a href="{{ navpage.url | prepend: site.baseurl }}">{{ navpage.title }}</a></li>
{% endif %}
{% endfor %}
</ul>
</nav>
</header>
_layouts/default.html 0 → 100644
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<!DOCTYPE html>
<html>
{% include head.html %}
<body>
{% include header.html %}
<div class="container">{{ content }}</div>
{% include footer.html %}
</body>
</html>
_layouts/page.html 0 → 100644
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---
layout: default
---
<div class="post">
<header class="post-header">
<h1 class="post-title">{{ page.title }}</h1>
</header>
<article class="post-content">{{ content }}</article>
</div>
_layouts/post.html 0 → 100644
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---
layout: default
---
<div class="post">
<header class="post-header">
<h1 class="post-title">{{ page.title }}</h1>
<p class="post-meta">{{ page.date | date: "%b %-d, %Y" }}{% if page.author %} • {{ page.author }}{% endif %}{% if page.meta %} • {{ page.meta }}{% endif %}</p>
</header>
<article class="post-content">
{{ content }}
</article>
</div>
_posts/2015-10-07-welcome-to-jekyll.markdown 0 → 100644
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---
layout: post
title: "Welcome to Jekyll!"
date: 2015-10-07 15:23:07
categories: jekyll update
---
You’ll find this post in your `_posts` directory. Go ahead and edit it and re-build the site to see your changes. You can rebuild the site in many different ways, but the most common way is to run `jekyll serve`, which launches a web server and auto-regenerates your site when a file is updated.
To add new posts, simply add a file in the `_posts` directory that follows the convention `YYYY-MM-DD-name-of-post.ext` and includes the necessary front matter. Take a look at the source for this post to get an idea about how it works.
Jekyll also offers powerful support for code snippets:
{% highlight ruby %}
def print_hi(name)
puts "Hi, #{name}"
end
print_hi('Tom')
#=> prints 'Hi, Tom' to STDOUT.
{% endhighlight %}
Check out the [Jekyll docs][jekyll] for more info on how to get the most out of Jekyll. File all bugs/feature requests at [Jekyll’s GitHub repo][jekyll-gh]. If you have questions, you can ask them on [Jekyll’s dedicated Help repository][jekyll-help].
[jekyll]: http://jekyllrb.com
[jekyll-gh]: https://github.com/jekyll/jekyll
[jekyll-help]: https://github.com/jekyll/jekyll-help
_sass/_base.scss 0 → 100644
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.site-footer {
padding: 10px 0px;
color: #999;
text-align: center;
background-color: #F9F9F9;
border-top: 1px solid #E5E5E5;
position: absolute;
bottom: 0px;
width: 100%;
}
.site-header {
top: 0px;
border-width: 0px 0px 1px;
position: fixed;
right: 0px;
left: 0px;
z-index: 1030;
}
body {
padding-top: 35px;
}
_sass/_bootstrap.scss 0 → 100644
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/*!
* Bootstrap v3.3.5 (http://getbootstrap.com)
* Copyright 2011-2015 Twitter, Inc.
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
*/
// Core variables and mixins
@import "bootstrap/variables";
@import "bootstrap/mixins";
// Reset and dependencies
@import "bootstrap/normalize";
@import "bootstrap/print";
@import "bootstrap/glyphicons";
// Core CSS
@import "bootstrap/scaffolding";
@import "bootstrap/type";
@import "bootstrap/code";
@import "bootstrap/grid";
@import "bootstrap/tables";
@import "bootstrap/forms";
@import "bootstrap/buttons";
// Components
@import "bootstrap/component-animations";
@import "bootstrap/dropdowns";
@import "bootstrap/button-groups";
@import "bootstrap/input-groups";
@import "bootstrap/navs";
@import "bootstrap/navbar";
@import "bootstrap/breadcrumbs";
@import "bootstrap/pagination";
@import "bootstrap/pager";
@import "bootstrap/labels";
@import "bootstrap/badges";
@import "bootstrap/jumbotron";
@import "bootstrap/thumbnails";
@import "bootstrap/alerts";
@import "bootstrap/progress-bars";
@import "bootstrap/media";
@import "bootstrap/list-group";
@import "bootstrap/panels";
@import "bootstrap/responsive-embed";
@import "bootstrap/wells";
@import "bootstrap/close";
// Components w/ JavaScript
@import "bootstrap/modals";
@import "bootstrap/tooltip";
@import "bootstrap/popovers";
@import "bootstrap/carousel";
// Utility classes
@import "bootstrap/utilities";
@import "bootstrap/responsive-utilities";
_sass/_layout.scss 0 → 100644
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/**
* Site header
*/
.site-header {
border-top: 5px solid $grey-color-dark;
border-bottom: 1px solid $grey-color-light;
min-height: 56px;
// Positioning context for the mobile navigation icon
position: relative;
}
.site-title {
font-size: 26px;
line-height: 56px;
letter-spacing: -1px;
margin-bottom: 0;
float: left;
&,
&:visited {
color: $grey-color-dark;
}
}
.site-nav {
float: right;
line-height: 56px;
.menu-icon {
display: none;
}
.page-link {
color: $text-color;
line-height: $base-line-height;
// Gaps between nav items, but not on the first one
&:not(:first-child) {
margin-left: 20px;
}
}
@include media-query($on-palm) {
position: absolute;
top: 9px;
right: 30px;
background-color: $background-color;
border: 1px solid $grey-color-light;
border-radius: 5px;
text-align: right;
.menu-icon {
display: block;
float: right;
width: 36px;
height: 26px;
line-height: 0;
padding-top: 10px;
text-align: center;
> svg {
width: 18px;
height: 15px;
path {
fill: $grey-color-dark;
}
}
}
.trigger {
clear: both;
display: none;
}
&:hover .trigger {
display: block;
padding-bottom: 5px;
}
.page-link {
display: block;
padding: 5px 10px;
}
}
}
/**
* Site footer
*/
.site-footer {
border-top: 1px solid $grey-color-light;
padding: $spacing-unit 0;
}
.footer-heading {
font-size: 18px;
margin-bottom: $spacing-unit / 2;
}
.contact-list,
.social-media-list {
list-style: none;
margin-left: 0;
}
.footer-col-wrapper {
font-size: 15px;
color: $grey-color;
margin-left: -$spacing-unit / 2;
@extend %clearfix;
}
.footer-col {
float: left;
margin-bottom: $spacing-unit / 2;
padding-left: $spacing-unit / 2;
}
.footer-col-1 {
width: -webkit-calc(35% - (#{$spacing-unit} / 2));
width: calc(35% - (#{$spacing-unit} / 2));
}
.footer-col-2 {
width: -webkit-calc(20% - (#{$spacing-unit} / 2));
width: calc(20% - (#{$spacing-unit} / 2));
}
.footer-col-3 {
width: -webkit-calc(45% - (#{$spacing-unit} / 2));
width: calc(45% - (#{$spacing-unit} / 2));
}
@include media-query($on-laptop) {
.footer-col-1,
.footer-col-2 {
width: -webkit-calc(50% - (#{$spacing-unit} / 2));
width: calc(50% - (#{$spacing-unit} / 2));
}
.footer-col-3 {
width: -webkit-calc(100% - (#{$spacing-unit} / 2));
width: calc(100% - (#{$spacing-unit} / 2));
}
}
@include media-query($on-palm) {
.footer-col {
float: none;
width: -webkit-calc(100% - (#{$spacing-unit} / 2));
width: calc(100% - (#{$spacing-unit} / 2));
}
}
/**
* Page content
*/
.page-content {
padding: $spacing-unit 0;
}
.page-heading {
font-size: 20px;
}
.post-list {
margin-left: 0;
list-style: none;
> li {
margin-bottom: $spacing-unit;
}
}
.post-meta {
font-size: $small-font-size;
color: $grey-color;
}
.post-link {
display: block;
font-size: 24px;
}
/**
* Posts
*/
.post-header {
margin-bottom: $spacing-unit;
}
.post-title {
font-size: 42px;
letter-spacing: -1px;
line-height: 1;
@include media-query($on-laptop) {
font-size: 36px;
}
}
.post-content {
margin-bottom: $spacing-unit;
h2 {
font-size: 32px;
@include media-query($on-laptop) {
font-size: 28px;
}
}
h3 {
font-size: 26px;
@include media-query($on-laptop) {
font-size: 22px;
}
}
h4 {
font-size: 20px;
@include media-query($on-laptop) {
font-size: 18px;
}
}
}
_sass/_syntax-highlighting.scss 0 → 100644
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/**
* Syntax highlighting styles
*/
.highlight {
background: #fff;
@extend %vertical-rhythm;
.c { color: #998; font-style: italic } // Comment
.err { color: #a61717; background-color: #e3d2d2 } // Error
.k { font-weight: bold } // Keyword
.o { font-weight: bold } // Operator
.cm { color: #998; font-style: italic } // Comment.Multiline
.cp { color: #999; font-weight: bold } // Comment.Preproc
.c1 { color: #998; font-style: italic } // Comment.Single
.cs { color: #999; font-weight: bold; font-style: italic } // Comment.Special
.gd { color: #000; background-color: #fdd } // Generic.Deleted
.gd .x { color: #000; background-color: #faa } // Generic.Deleted.Specific
.ge { font-style: italic } // Generic.Emph
.gr { color: #a00 } // Generic.Error
.gh { color: #999 } // Generic.Heading
.gi { color: #000; background-color: #dfd } // Generic.Inserted
.gi .x { color: #000; background-color: #afa } // Generic.Inserted.Specific
.go { color: #888 } // Generic.Output
.gp { color: #555 } // Generic.Prompt
.gs { font-weight: bold } // Generic.Strong
.gu { color: #aaa } // Generic.Subheading
.gt { color: #a00 } // Generic.Traceback
.kc { font-weight: bold } // Keyword.Constant
.kd { font-weight: bold } // Keyword.Declaration
.kp { font-weight: bold } // Keyword.Pseudo
.kr { font-weight: bold } // Keyword.Reserved
.kt { color: #458; font-weight: bold } // Keyword.Type
.m { color: #099 } // Literal.Number
.s { color: #d14 } // Literal.String
.na { color: #008080 } // Name.Attribute
.nb { color: #0086B3 } // Name.Builtin
.nc { color: #458; font-weight: bold } // Name.Class
.no { color: #008080 } // Name.Constant
.ni { color: #800080 } // Name.Entity
.ne { color: #900; font-weight: bold } // Name.Exception
.nf { color: #900; font-weight: bold } // Name.Function
.nn { color: #555 } // Name.Namespace
.nt { color: #000080 } // Name.Tag
.nv { color: #008080 } // Name.Variable
.ow { font-weight: bold } // Operator.Word
.w { color: #bbb } // Text.Whitespace
.mf { color: #099 } // Literal.Number.Float
.mh { color: #099 } // Literal.Number.Hex
.mi { color: #099 } // Literal.Number.Integer
.mo { color: #099 } // Literal.Number.Oct
.sb { color: #d14 } // Literal.String.Backtick
.sc { color: #d14 } // Literal.String.Char
.sd { color: #d14 } // Literal.String.Doc
.s2 { color: #d14 } // Literal.String.Double
.se { color: #d14 } // Literal.String.Escape
.sh { color: #d14 } // Literal.String.Heredoc
.si { color: #d14 } // Literal.String.Interpol
.sx { color: #d14 } // Literal.String.Other
.sr { color: #009926 } // Literal.String.Regex
.s1 { color: #d14 } // Literal.String.Single
.ss { color: #990073 } // Literal.String.Symbol
.bp { color: #999 } // Name.Builtin.Pseudo
.vc { color: #008080 } // Name.Variable.Class
.vg { color: #008080 } // Name.Variable.Global
.vi { color: #008080 } // Name.Variable.Instance
.il { color: #099 } // Literal.Number.Integer.Long
}
_sass/bootstrap/_alerts.scss 0 → 100644
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//
// Alerts
// --------------------------------------------------
// Base styles
// -------------------------
.alert {
padding: $alert-padding;
margin-bottom: $line-height-computed;
border: 1px solid transparent;
border-radius: $alert-border-radius;
// Headings for larger alerts
h4 {
margin-top: 0;
// Specified for the h4 to prevent conflicts of changing $headings-color
color: inherit;
}
// Provide class for links that match alerts
.alert-link {
font-weight: $alert-link-font-weight;
}
// Improve alignment and spacing of inner content
> p,
> ul {
margin-bottom: 0;
}
> p + p {
margin-top: 5px;
}
}
// Dismissible alerts
//
// Expand the right padding and account for the close button's positioning.
.alert-dismissable, // The misspelled .alert-dismissable was deprecated in 3.2.0.
.alert-dismissible {
padding-right: ($alert-padding + 20);
// Adjust close link position
.close {
position: relative;
top: -2px;
right: -21px;
color: inherit;
}
}
// Alternate styles
//
// Generate contextual modifier classes for colorizing the alert.
.alert-success {
@include alert-variant($alert-success-bg, $alert-success-border, $alert-success-text);
}
.alert-info {
@include alert-variant($alert-info-bg, $alert-info-border, $alert-info-text);
}
.alert-warning {
@include alert-variant($alert-warning-bg, $alert-warning-border, $alert-warning-text);
}
.alert-danger {
@include alert-variant($alert-danger-bg, $alert-danger-border, $alert-danger-text);
}
_sass/bootstrap/_badges.scss 0 → 100644
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//
// Badges
// --------------------------------------------------
// Base class
.badge {
display: inline-block;
min-width: 10px;
padding: 3px 7px;
font-size: $font-size-small;
font-weight: $badge-font-weight;
color: $badge-color;
line-height: $badge-line-height;
vertical-align: middle;
white-space: nowrap;
text-align: center;
background-color: $badge-bg;
border-radius: $badge-border-radius;
// Empty badges collapse automatically (not available in IE8)
&:empty {
display: none;
}
// Quick fix for badges in buttons
.btn & {
position: relative;
top: -1px;
}
.btn-xs &,
.btn-group-xs > .btn & {
top: 0;
padding: 1px 5px;
}