diff --git a/tm_curation/curate_from_tm.md b/tm_curation/curate_from_tm.md index 27beeb06fcbcbf45e49b7658ba81a1dba13024f3..f877c75e3377a30aafb90607d9e16c8f661b73c3 100644 --- a/tm_curation/curate_from_tm.md +++ b/tm_curation/curate_from_tm.md @@ -91,6 +91,9 @@ Take a look at the [vocabulary disclaimer](#read-first-vocabulary-and-data-model 2.1.3 Set up the initial compartment for the facts, use  button to add a compartment and  to edit it. In the example below, the compartment is set to "cell" with the [qualifier annotation](http://mbine.org/standards/qualifiers) set to "bqbiol:is", annotation ontology set to "Cell Ontology" and the assigned identifier to [CL:0000000 (cell)](http://purl.obolibrary.org/obo/CL_0000000) (3 in the figure below). +2.1.4 Set the default qualifier to "bqbiol:is" and the annotation ontology set to "Uniprot Knowledgebase". +These will be used as defaults when adding elements. + <img src="../images/tmc_2_1_basket_details_inset.png" width="600"> ### 2.2. Add elements @@ -104,7 +107,7 @@ Take a look at the [vocabulary disclaimer](#read-first-vocabulary-and-data-model Example: - use previolusly defined "cell" as the "Compartment" - set "Bioentity type" to "Generic protein" -- set identifier namespace to "Uniprot Knowledgebase". +- identifier qualifier and namespace are set from defaults. Repeat for p65 and set its name to "RELA" by modifying the field "Species Name".