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mice_amr_2021
Commit b0023cd1 authored by Laura Denies's avatar Laura Denies
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Integron_Prediction/hmm_model_integron/intI.hmm 0 → 100644
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HMMER3/f [3.3.1 | Jul 2020]
NAME variants_Pc_intI1
LENG 38
MAXL 98
ALPH DNA
RF no
MM no
CONS yes
CS no
MAP yes
DATE Tue Oct 13 09:12:37 2020
NSEQ 18
EFFN 18.000000
CKSUM 4057965001
STATS LOCAL MSV -6.9962 0.71967
STATS LOCAL VITERBI -7.1098 0.71967
STATS LOCAL FORWARD -4.2046 0.71967
HMM A C G T
m->m m->i m->d i->m i->i d->m d->d
COMPO 1.48445 1.73158 1.40741 1.04529
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 0.00000 *
1 5.06484 4.63897 5.19479 0.02176 1 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
2 3.26048 2.44420 1.38719 0.46991 2 t - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
3 4.76621 5.71727 0.01596 5.51247 3 G - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
4 0.62867 3.06177 2.39570 1.11236 4 a - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
5 4.54642 0.51681 4.77571 0.95570 5 c - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
6 0.01067 5.95691 5.29245 5.81020 6 A - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
7 5.06484 4.63897 5.19479 0.02176 7 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
8 0.44783 4.95555 1.06353 4.74343 8 a - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
9 0.01067 5.95691 5.29245 5.81020 9 A - - -
1.38629 1.38629 1.38629 1.38629
0.37371 5.30827 1.18132 1.46634 0.26236 1.09861 0.40547
10 4.21087 5.13738 0.02824 4.94159 10 G - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
11 4.56506 0.03834 4.74902 3.98753 11 C - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 0.14110 2.02800
12 4.99785 0.02437 5.17336 4.45142 12 C - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
13 5.06484 4.63897 5.19479 0.02176 13 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
14 4.76621 5.71727 0.01596 5.51247 14 G - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
15 5.06484 4.63897 5.19479 0.02176 15 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
16 5.06484 4.63897 5.19479 0.02176 16 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
17 4.57096 0.44204 4.80403 1.08255 17 c - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
18 3.94673 4.14077 0.44371 1.12973 18 g - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
19 3.94673 4.14077 0.44371 1.12973 19 g - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
20 5.06484 4.63897 5.19479 0.02176 20 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
21 5.06484 4.63897 5.19479 0.02176 21 T - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
22 3.45564 0.85173 0.79036 2.42958 22 g - - -
1.38629 1.38629 1.38629 1.38629
0.06243 5.30827 2.89011 1.46634 0.26236 1.09861 0.40547
23 4.68567 5.63423 0.01733 5.43083 23 G - - -
1.38629 1.38629 1.38629 1.38629
0.01048 5.25632 5.25632 1.46634 0.26236 1.61841 0.22091
24 4.05234 3.93575 1.22758 0.40035 24 t - - -
1.38629 1.38629 1.38629 1.38629
0.01048 5.25632 5.25632 1.46634 0.26236 1.61841 0.22091
25 0.47340 4.81046 1.02479 4.59486 25 a - - -
1.38629 1.38629 1.38629 1.38629
0.01048 5.25632 5.25632 1.46634 0.26236 0.50489 0.92526
26 0.54995 3.05978 2.29062 1.29128 26 a - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
27 0.31190 5.11438 1.36810 4.91324 27 a - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
28 4.99785 0.02437 5.17336 4.45142 28 C - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
29 1.10740 3.87837 4.17353 0.45649 29 t - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
30 2.37011 2.54919 0.21456 3.84022 30 g - - -
1.38629 1.38629 1.38629 1.38629
0.00995 5.30827 5.30827 1.46634 0.26236 1.09861 0.40547
31 2.40550 4.20834 4.79222 0.12034 31 t - - -
1.38629 1.38629 1.38629 1.38629
0.37371 5.30827 1.18132 1.46634 0.26236 1.09861 0.40547
32 0.01760 5.39613 4.85598 5.27167 32 A - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
33 0.01760 5.39613 4.85598 5.27167 33 A - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
34 4.58898 4.12141 4.72934 0.03585 34 T - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
35 4.56506 0.03834 4.74902 3.98753 35 C - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
36 4.21087 5.13738 0.02824 4.94159 36 G - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
37 4.56506 0.03834 4.74902 3.98753 37 C - - -
1.38629 1.38629 1.38629 1.38629
0.01428 4.94884 4.94884 1.46634 0.26236 2.72115 0.06806
38 0.01760 5.39613 4.85598 5.27167 38 A - - -
1.38629 1.38629 1.38629 1.38629
0.00717 4.94172 * 1.46634 0.26236 0.00000 *
//
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