Commit 360f2f1c authored by Susheel Busi's avatar Susheel Busi
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Update README.md

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# amr_mice_cosmic
- Here in lie the scripts and methods used to generate data for the two following projects
## Here in lie the scripts and methods used to generate data for the two following projects
- mice-AMR study
- A brief description of the analyses is below:
## A brief description of the analyses is below:
- Snakefiles: snakemake-based scripts for launching IMP3, MAG taxonomy and quality analyses and integron coordinate retrieval
- config: folder containing all config files required for Snakefiles
- envs: folder containing all conda environments, including for Rscript analyses
- Integron_Prediction: folder including snakefile, config and supplementary scripts for integron prediction
- scripts: folder containing supplementary scripts, including Rscripts for generating figures for the paper
## Step-by-step analyses
- Detailed and additional information including explicitly described processing steps can be found in the [Wiki](https://git-r3lab.uni.lu/susheel.busi/intonate/-/wikis/mice_amr_analyses)
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