updated the CAMISIM metadata file and Snakefile to include the new version....

updated the CAMISIM metadata file and Snakefile to include the new version. This fixes the errors with the missing taxIDs

Snakefile

@@ -156,7 +156,7 @@ rule copy_CAMISIM_config:
 rule edit_config:
     input:
         config=os.path.join(RESULTS_DIR, "CAMISIM/mini_config.ini"),
-        metadata=os.path.join(SUBMODULES, "edited_metadata.tsv"),
+        metadata=os.path.join(SUBMODULES, "updated_metadata.tsv"),
         genomes=os.path.join(SUBMODULES, "edited_genome_to_id.tsv")
     output:
         oconfig=os.path.join(RESULTS_DIR, "CAMISIM/mini_config_edited.ini")

edited_metadata.tsv

@@ -654,7 +654,7 @@ bac_genome652	2109731	2109731	known_strain
 bac_genome653	2135448	2135448	known_strain
 bac_genome654	2136175	2136175	known_strain
 bac_genome655	2136177	2136177	known_strain
-bac_genome656	2137016	2137016	known_strain
+bac_genome656	85011	85011	known_strain
 bac_genome657	2137476	2137476	known_strain
 bac_genome658	2144188	2144188	known_strain
 bac_genome659	2152716	2152716	known_strain

submodules/edited_metadata.tsv

@@ -654,7 +654,7 @@ bac_genome652	2109731	2109731	known_strain
 bac_genome653	2135448	2135448	known_strain
 bac_genome654	2136175	2136175	known_strain
 bac_genome655	2136177	2136177	known_strain
-bac_genome656	2137016	2137016	known_strain
+bac_genome656	85011	85011	known_strain
 bac_genome657	2137476	2137476	known_strain
 bac_genome658	2144188	2144188	known_strain
 bac_genome659	2152716	2152716	known_strain
@@ -715,7 +715,7 @@ bac_genome713	2305228	2305228	known_strain
 bac_genome714	2305464	2305464	known_strain
 bac_genome715	2306021	2306021	known_strain
 bac_genome716	2315729	2315729	known_strain
-bac_genome717	2316646	2316646	known_strain
+bac_genome717	2	2	known_strain
 bac_genome718	2316714	2316714	known_strain
 bac_genome719	2316715	2316715	known_strain
 bac_genome720	2316716	2316716	known_strain
@@ -900,13 +900,13 @@ bac_genome898	2589891	2589891	known_strain
 bac_genome899	2589894	2589894	known_strain
 bac_genome900	2589895	2589895	known_strain
 bac_genome901	2589899	2589899	known_strain
-bac_genome902	2589900	2589900	known_strain
+bac_genome902	356	356	known_strain
 bac_genome903	2589902	2589902	known_strain
 bac_genome904	2589907	2589907	known_strain
 bac_genome905	2589908	2589908	known_strain
 bac_genome906	2589909	2589909	known_strain
 bac_genome907	2589914	2589914	known_strain
-bac_genome908	2589918	2589918	known_strain
+bac_genome908	69277	69277	known_strain
 bac_genome909	2589921	2589921	known_strain
 bac_genome910	2589924	2589924	known_strain
 bac_genome911	2589926	2589926	known_strain