From 862f1033d51b5a40aee273c8dbb5105432bdb3d9 Mon Sep 17 00:00:00 2001
From: root <root@prc-test.parkinson.lu>
Date: Tue, 12 Jan 2021 10:38:33 +0100
Subject: [PATCH] migration script was failing when db v0.15.x contained
subjects
---
CHANGELOG | 6 +++
.../0190_remove_study_related_fields.py | 50 +++++++++----------
2 files changed, 31 insertions(+), 25 deletions(-)
diff --git a/CHANGELOG b/CHANGELOG
index bcb023d6..1953dd3d 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,9 @@
+smasch (1.0.0~beta.3-1) unstable; urgency=low
+
+ * bug fix: upgrade from 0.15 version containing subjects failed
+
+ -- Piotr Gawron <piotr.gawron@uni.lu> Tue, 12 Jan 2021 10:00:00 +0200
+
smasch (1.0.0~beta.2-1) unstable; urgency=low
* bug fix: npm dependencies must be more strict
diff --git a/smash/web/migrations/0190_remove_study_related_fields.py b/smash/web/migrations/0190_remove_study_related_fields.py
index c95ddbfc..6b7207d1 100644
--- a/smash/web/migrations/0190_remove_study_related_fields.py
+++ b/smash/web/migrations/0190_remove_study_related_fields.py
@@ -38,156 +38,156 @@ def create_custom_fields(apps, schema_editor):
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Inconclusive",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_2_result_field = CustomStudySubjectField.objects.create(name="Virus 1 RT-PCR",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Inconclusive",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_3_result_field = CustomStudySubjectField.objects.create(name="Virus 2 RT-PCR",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Inconclusive",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_4_result_field = CustomStudySubjectField.objects.create(name="Virus 3 RT-PCR",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Inconclusive",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_5_result_field = CustomStudySubjectField.objects.create(name="Virus 4 RT-PCR",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Inconclusive",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_1_updated_field = CustomStudySubjectField.objects.create(name="Visit 0 RT-PCR update date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_2_updated_field = CustomStudySubjectField.objects.create(name="Visit 1 RT-PCR update date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_3_updated_field = CustomStudySubjectField.objects.create(name="Visit 2 RT-PCR update date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_4_updated_field = CustomStudySubjectField.objects.create(name="Visit 3 RT-PCR update date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_5_updated_field = CustomStudySubjectField.objects.create(name="Visit 4 RT-PCR update date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_1_collection_date_field = CustomStudySubjectField.objects.create(
name="Visit 0 RT-PCR collection date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_2_collection_date_field = CustomStudySubjectField.objects.create(
name="Visit 1 RT-PCR collection date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_3_collection_date_field = CustomStudySubjectField.objects.create(
name="Visit 2 RT-PCR collection date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_4_collection_date_field = CustomStudySubjectField.objects.create(
name="Visit 3 RT-PCR collection date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_5_collection_date_field = CustomStudySubjectField.objects.create(
name="Visit 4 RT-PCR collection date",
type=CUSTOM_FIELD_TYPE_DATE,
study_id=GLOBAL_STUDY_ID,
- default="",
+ default_value="",
readonly=True)
virus_test_1_iga_status_field = CustomStudySubjectField.objects.create(
name="Visit 0 IgA Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_2_iga_status_field = CustomStudySubjectField.objects.create(
name="Visit 1 IgA Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_3_iga_status_field = CustomStudySubjectField.objects.create(
name="Visit 2 IgA Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_4_iga_status_field = CustomStudySubjectField.objects.create(
name="Visit 3 IgA Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_5_iga_status_field = CustomStudySubjectField.objects.create(
name="Visit 4 IgA Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_1_igg_status_field = CustomStudySubjectField.objects.create(
name="Visit 0 IgG Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_2_igg_status_field = CustomStudySubjectField.objects.create(
name="Visit 1 IgG Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_3_igg_status_field = CustomStudySubjectField.objects.create(
name="Visit 2 IgG Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_4_igg_status_field = CustomStudySubjectField.objects.create(
name="Visit 3 IgG Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
virus_test_5_igg_status_field = CustomStudySubjectField.objects.create(
name="Visit 4 IgG Status",
type=CUSTOM_FIELD_TYPE_SELECT_LIST,
study_id=GLOBAL_STUDY_ID,
possible_values="N/A;Positive;Negative;Borderline",
- default="N/A",
+ default_value="N/A",
readonly=True)
for subject in StudySubject.objects.all():
--
GitLab