Skip to content

GitLab

Commit 79fc4970 authored by Pinar Alper's avatar Pinar Alper
Browse files

Uncode character no in institution names

parent 22a748f1
Hide whitespace changes
Inline Side-by-side
metadata-tools/resources/elu_institutions.json
View file @ 79fc4970
......@@ -2,303 +2,378 @@
{
"elu_accession": "ELU_I_1",
"institution_name": "Integrated Biobank of Luxembourg (IBBL)",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_2",
"institution_name": "European Molecular Biology Laboratory (EMBL)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_3",
"institution_name": "Erasmus Hospital Brussels",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_4",
"institution_name": "Erasmus University Medical Center (Erasmus MC)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_5",
"institution_name": "August Pi i Sunyer Biomedical Research Institute (IDIBAPS)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_6",
"institution_name": "University Hospital of the Saarland (UKS Homburg)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_7",
"institution_name": "University Medical Center Utrecht (UMC Utrecht)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_8",
"institution_name": "University of Tübingen",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_9",
"institution_name": "Centre Hospitalier de Luxembourg (CHL)",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_10",
"institution_name": "Charité University Hospital Berlin",
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_11",
"institution_name": "Cologne Center for Genomics (CCG)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_12",
"institution_name": "23andMe Company",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_13",
"institution_name": "Fraunhofer Institute for Algorithms and Scientific Computing (Fraunhofer SCAI)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_14",
"institution_name": "Karolinska Institute",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_15",
"institution_name": "Boehringer Ingelheim International GmbH",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_16",
"institution_name": "Union Chimique Belge (UCB) Biopharma",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_17",
"institution_name": "Brain \& Spine Institute (ICM)",
"geo_category": "EU"},
"institution_name": "Brain and Spine Institute (ICM)",
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_18",
"institution_name": "Alstem LLC",
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_19",
"institution_name": "Baylor College of Medicine",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_20",
"institution_name": "Biomedical Research Foundation Academy Of Athens (BRFAA)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_21",
"institution_name": "Brazilian Institute of Neuroscience and Neurotechnology (BRAINN)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_22",
"institution_name": "Centre Hospitalier Emile Mayrisch (CHEM)",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_23",
"institution_name": "Charité – Universitätsmedizin Berlin",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_24",
"institution_name": "Children\'s Hospital of Philadelphia",
"geo_category": "Non-EU"},
"institution_name": "Children\u2019s Hospital of Philadelphia",
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_25",
"institution_name": "Cornell University",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_26",
"institution_name": "Corriell Institute for Medical Research",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_27",
"institution_name": "European Bank for induced pluripotent Stem Cells (EBiSC)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_28",
"institution_name": "Duke University",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_29",
"institution_name": "Columbia University",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_30",
"institution_name": "Oxford Parkinson\'s Disease Centre (OPDC)",
"geo_category": "EU"},
"institution_name": "Oxford Parkinson\u2019s Disease Centre (OPDC)",
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_31",
"institution_name": "Giannina Gaslini Institute (Gaslini Biobank)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_32",
"institution_name": "Thermo Fisher Scientific",
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_33",
"institution_name": "Griffith Institute for Drug Discovery (GRIDD)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_34",
"institution_name": "Institute of Ophthalmic Research - Tübingen",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_35",
"institution_name": "Luxembourg Institute of Science and Technology (LIST)",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_36",
"institution_name": "Life Sciences Research Unit - University of Luxembourg (LSRU)",
"geo_category": "National"
},
{
"elu_accession": "ELU_I_37",
"institution_name": "Luxembourg Red Cross",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_38",
"institution_name": "Michael J. Fox Foundation for Parkinson\'s Research (MJFF)",
"geo_category": "Non-EU"},
"institution_name": "Michael J. Fox Foundation for Parkinson\u2019s Research (MJFF)",
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_39",
"institution_name": "Maastricht University",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_40",
"institution_name": "Magdeburg University Hospital",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_41",
"institution_name": "Max Planck Society",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_42",
"institution_name": "Max Rubner-Institut (MRI)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_43",
"institution_name": "Mayo Clinic",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_44",
"institution_name": "Medical Research Council Unit The Gambia (MRC Unit The Gambia - LSHTM)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_45",
"institution_name": "Murdoch Children\'s Research Institute (MCRI)",
"geo_category": "Non-EU"},
"institution_name": "Murdoch Children\u2019s Research Institute (MCRI)",
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_46",
"institution_name": "National Institute on Aging (NIA)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_47",
"institution_name": "National Institutes of Health (NIH)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_48",
"institution_name": "Newcastle University",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_49",
"institution_name": "Norwegian University of Science and Technology (NTNU)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_50",
"institution_name": "Ohio State University Comprehensive Cancer Center (OSUCCC – James)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_51",
"institution_name": "Paracelsus-Elena-Klinik",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_52",
"institution_name": "Royal College of Surgeons - Ireland",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_53",
"institution_name": "Sage Bionetworks",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_54",
"institution_name": "Betterhumans Inc. Supercentenarians Research Study",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_55",
"institution_name": "Technical University Dresden (TU Dresden)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_56",
"institution_name": "University Hospital of Würzburg",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_57",
"institution_name": "University Hospital Bonn",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_58",
"institution_name": "University College London (UCL)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_59",
"institution_name": "University Hospital Cologne",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_60",
"institution_name": "University of Luxembourg",
"geo_category": "National"},
"geo_category": "National"
},
{
"elu_accession": "ELU_I_61",
"institution_name": "University Hospital Tübingen",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_62",
"institution_name": "University of Lübeck",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_63",
"institution_name": "University Medical Center Göttingen",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_64",
"institution_name": "Philipps University - Marburg",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_65",
"institution_name": "University of Trier",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_66",
"institution_name": "University Hospital Kiel (UKSH)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_67",
"institution_name": "University of Adelide",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_68",
"institution_name": "University of Eastern Finland (UEF)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_69",
"institution_name": "University of Melbourne",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_70",
"institution_name": "University of Vienna",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_71",
"institution_name": "University of Oslo (UiO)",
"geo_category": "Non-EU"},
"geo_category": "Non-EU"
},
{
"elu_accession": "ELU_I_72",
"institution_name": "Uppsala University",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_73",
"institution_name": "University Hospital Salzburg (SALK)",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_74",
"institution_name": "Wellcome Sanger Institute",
"geo_category": "EU"},
"geo_category": "EU"
},
{
"elu_accession": "ELU_I_75",
"institution_name": "Zithaklinik - Hôpitaux Robert Schuman",
"geo_category": "National"
},
{
"elu_accession": "ELU_I_76",
"institution_name": "Broad Institute",
......
metadata-tools/resources/elx-dataset.json
View file @ 79fc4970
......@@ -34,12 +34,6 @@
}
]
},
"other_external_id": {
"type": "string"
},
"access_category": {
"type": "string"
},
"use_restrictions": {
"type": "array",
"items": {
......@@ -48,26 +42,26 @@
"ga4gh_code": {
"type": "string",
"enum": [
'NRES',
'GRU(CC)',
'HMB(CC)',
'DS-[XX](CC)',
'POA',
'RS-[XX]',
'RUO',
'NMDS',
'GSO',
'NPU',
'PUB',
'COL-[XX]',
'RTN',
'IRB',
'GS-[XX]',
'MOR-[XX]',
'TS-[XX]',
'US',
'PS',
'IS'
"NRES",
"GRU(CC)",
"HMB(CC)",
"DS-[XX](CC)",
"POA",
"RS-[XX]",
"RUO",
"NMDS",
"GSO",
"NPU",
"PUB",
"COL-[XX]",
"RTN",
"IRB",
"GS-[XX]",
"MOR-[XX]",
"TS-[XX]",
"US",
"PS",
"IS"
]
},
"note": {
......@@ -113,6 +107,12 @@
"data_type_notes": {
"type": "string"
},
"other_external_id": {
"type": "string"
},
"access_category": {
"type": "string"
},
"subject_categories": {
"type": "array",
"items": {
......
metadata-tools/resources/elx-study.json
View file @ 79fc4970
......@@ -8,7 +8,7 @@
"acronym",
"title",
"description",
"type_descriptors",
"study_types",
"funding_sources",
"contacts"
],
......@@ -28,13 +28,6 @@
"end_date": {
"type": "string"
},
"web_page": {
"type": "string",
"format": "uri"
},
"in_ex_criteria": {
"type": "string"
},
"descriptors": {
"type": "array",
"minItems": 1,
......@@ -112,13 +105,20 @@
"is_multi_site": {
"type": "boolean"
},
"web_page": {
"type": "string",
"format": "uri"
},
"in_ex_criteria": {
"type": "string"
},
"has_institutional_ethics_approval": {
"type": "boolean"
},
"institutional_ethics_approval_notes": {
"type": "string"
},
"national_ethics_approval": {
"has_national_ethics_approval": {
"type": "boolean"
},
"national_ethics_approval_notes": {
......@@ -159,6 +159,9 @@
},
"phone": {
"type": "string"
},
"contact_notes": {
"type": "string"
}
},
"required": [
......@@ -166,7 +169,7 @@
"last_name",
"role",
"email",
"affiliation"
"institution"
]
}
},
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment