From e2000ad2e14e4f55b364182a4839391321451e60 Mon Sep 17 00:00:00 2001 From: Vilem Ded <vilem.ded@uni.lu> Date: Tue, 12 May 2020 14:12:58 +0200 Subject: [PATCH] IT101-DM 2020-05-12 --- .../slides/DinoSequentialSmaller.gif | 1 + .../slides/cleaning-table.jpg | 1 + .../slides/code_versioning.md | 1 + .../slides/data-housekeeping.md | 1 + .../slides/data-introduction.md | 1 + 2020/2020-05-12_IT101-DM/slides/data_flow.md | 1 + .../slides/excel_analyses-sheet.jpeg | 1 + .../slides/fair-principles.md | 1 + 2020/2020-05-12_IT101-DM/slides/favicon.ico | 1 + 2020/2020-05-12_IT101-DM/slides/howtos.md | 1 + 2020/2020-05-12_IT101-DM/slides/img | 1 + 2020/2020-05-12_IT101-DM/slides/index.md | 20 +++ 2020/2020-05-12_IT101-DM/slides/ingestion.md | 1 + .../slides/introduction.md | 1 + 2020/2020-05-12_IT101-DM/slides/list.json | 1 + 2020/2020-05-12_IT101-DM/slides/overview.md | 1 + .../slides/problem_solving.md | 1 + 2020/2020-05-12_IT101-DM/slides/r3_group.md | 133 ++++++++++++++++++ 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b/2020/2020-05-12_IT101-DM/slides/howtos.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/howtos.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/img b/2020/2020-05-12_IT101-DM/slides/img new file mode 120000 index 00000000..49a2865e --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/img @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/ \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/index.md b/2020/2020-05-12_IT101-DM/slides/index.md new file mode 100644 index 00000000..c16924c2 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/index.md @@ -0,0 +1,20 @@ +# IT101 - Working with computers +<br>IT101 - Working with computers<br> +## May 12th, 2020 + +<div style="top: 6em; left: 0%; position: absolute;"> + <img src="theme/img/lcsb_bg.png"> +</div> + +<div style="top: 5em; left: 60%; position: absolute;"> + <img src="slides/img/r3-training-logo.png" height="200px"> + <br><br><br><br> + <h3></h3> + <br><br><br> + <h4> + Vilem Ded<br> + Data Steward<br> + vilem.ded@uni.lu<br> + <i>Luxembourg Centre for Systems Biomedicine</i> + </h4> +</div> diff --git a/2020/2020-05-12_IT101-DM/slides/ingestion.md b/2020/2020-05-12_IT101-DM/slides/ingestion.md new file mode 120000 index 00000000..05eea4bb --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/ingestion.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/ingestion.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/introduction.md b/2020/2020-05-12_IT101-DM/slides/introduction.md new file mode 120000 index 00000000..4b28996c --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/introduction.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/introduction.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/list.json b/2020/2020-05-12_IT101-DM/slides/list.json new file mode 120000 index 00000000..1302be9d --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/list.json @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/list.json \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/overview.md b/2020/2020-05-12_IT101-DM/slides/overview.md new file mode 120000 index 00000000..db510e2e --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/overview.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/overview.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/problem_solving.md b/2020/2020-05-12_IT101-DM/slides/problem_solving.md new file mode 120000 index 00000000..66f58da4 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/problem_solving.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/problem_solving.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/r3_group.md b/2020/2020-05-12_IT101-DM/slides/r3_group.md new file mode 100644 index 00000000..f9281d78 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/r3_group.md @@ -0,0 +1,133 @@ +# Responsible and Reproducible Research (R<sup>3</sup>) +## What is R<sup>3</sup>? + + +A multi-facetted change management +process built on 3 pillars: + +- R3 pathfinder + +- R3 school + +- R3 accelerator + +Common link module: R3 clinic + +<div style="top: -1em; left: 50%; position: absolute;"> + <img src="slides/img/3pillars-full.png"> +</div> + +<br> +<br> +<br> +<br> + +<aside class="notes"> +Pathfinder - policies, data management changes<br> +School - courses, howtos, trainnings<br> +Accelerator - advanced teams and their boost/support, CI/CD setup<br> +Clinic - hands-on, meetings in groups, code review + suggestions<br> +</aside> + +## R<sup>3</sup> Training + * LCSB's Monthly Data Management and Data Protection training + * ELIXIR Luxembourg's Best practices in research data management and stewardship <br> + start on 19th May 2020 - 3 x 2 day sessions <br> https://elixir-luxembourg.org/training + * R<sup>3</sup> school Git basics - every 4 months + <aside class="notes"> + Direct newcommers to this monthly training + </aside> + + + +# Responsible and Reproducible Research (R<sup>3</sup>) +<center><img src="slides/img/r3-training-logo.png" height="200px"></center> + +Your R<sup>3</sup> contacts: +<div style="display:block;text-align:center;position:relative"> +<div class="profile-container"> + + * Christophe Trefois + * <img src="slides/img/R3_profile_pictures/christophe_trefois.png"> + * R<sup>3</sup> coordination + +</div> +<div class="profile-container"> + + * Venkata Satagopam + * <img src="slides/img/R3_profile_pictures/venkata_satagopam.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Reinhard Schneider + * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png"> + * Head of Bioinformatics Core + +</div> +<div class="profile-container"> + + * Pinar Alper + * <img src="slides/img/R3_profile_pictures/pinar_alper.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Yohan Yarosz</li> + * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Laurent Heirendt</li> + * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png"> + * Git, CI + +</div> +<div class="profile-container"> + + * Wei Gu</li> + * <img src="slides/img/R3_profile_pictures/wei_gu.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Sarah Peter</li> + * <img src="slides/img/R3_profile_pictures/sarah_peter.png"> + * HPC + +</div> +<div class="profile-container"> + + * Vilem Ded</li> + * <img src="slides/img/R3_profile_pictures/vilem_ded.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Noua Toukourou</li> + * <img src="slides/img/R3_profile_pictures/noua_toukourou.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Alexey Kolodkin</li> + * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Maharshi Vyas</li> + * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png"> + * R<sup>3</sup> Core + +</div> + +</div> diff --git a/2020/2020-05-12_IT101-DM/slides/reproducibility.md b/2020/2020-05-12_IT101-DM/slides/reproducibility.md new file mode 120000 index 00000000..3c2445cf --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/reproducibility.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/reproducibility.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg b/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg new file mode 120000 index 00000000..94f5ee71 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/rudi_balling.jpg \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/storage_setup.md b/2020/2020-05-12_IT101-DM/slides/storage_setup.md new file mode 120000 index 00000000..d5363b00 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/storage_setup.md @@ -0,0 +1 @@ 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