diff --git a/2020/2020-05-12_IT101-DM/slides/DinoSequentialSmaller.gif b/2020/2020-05-12_IT101-DM/slides/DinoSequentialSmaller.gif new file mode 120000 index 0000000000000000000000000000000000000000..4fb59b8ec20821cb388d6e77f8e39c3af85effe8 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/DinoSequentialSmaller.gif @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/DinoSequentialSmaller.gif \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/cleaning-table.jpg b/2020/2020-05-12_IT101-DM/slides/cleaning-table.jpg new file mode 120000 index 0000000000000000000000000000000000000000..54f672eed344d52553dd73254926b8bcbcfb8a2d --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/cleaning-table.jpg @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/cleaning-table.jpg \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/code_versioning.md b/2020/2020-05-12_IT101-DM/slides/code_versioning.md new file mode 120000 index 0000000000000000000000000000000000000000..7cb1342ad9a15a80d7d07ef6b7a9499dea9a6fec --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/code_versioning.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/code_versioning.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/data-housekeeping.md b/2020/2020-05-12_IT101-DM/slides/data-housekeeping.md new file mode 120000 index 0000000000000000000000000000000000000000..747c3cef7d05e92b2f04f268f5164fac261c2514 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/data-housekeeping.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/data-housekeeping.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/data-introduction.md b/2020/2020-05-12_IT101-DM/slides/data-introduction.md new file mode 120000 index 0000000000000000000000000000000000000000..b8befc2396f2eebb4ebbcf2666eaa97805b3e6e9 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/data-introduction.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/data-introduction.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/data_flow.md b/2020/2020-05-12_IT101-DM/slides/data_flow.md new file mode 120000 index 0000000000000000000000000000000000000000..860b2b2a3187d8a82c2c5c7310269c24cdd69007 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/data_flow.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/data_flow.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/excel_analyses-sheet.jpeg b/2020/2020-05-12_IT101-DM/slides/excel_analyses-sheet.jpeg new file mode 120000 index 0000000000000000000000000000000000000000..6de93190d2cca1590e987dfc67efe92f99beca1e --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/excel_analyses-sheet.jpeg @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/excel_analyses-sheet.jpeg \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/fair-principles.md b/2020/2020-05-12_IT101-DM/slides/fair-principles.md new file mode 120000 index 0000000000000000000000000000000000000000..614979ebc89a9b0bf04cf6cb21f4dc31116fb19d --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/fair-principles.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/fair-principles.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/favicon.ico b/2020/2020-05-12_IT101-DM/slides/favicon.ico new file mode 120000 index 0000000000000000000000000000000000000000..d661e6729facc9bb5b8f8840a45da88f2254fd71 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/favicon.ico @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/favicon.ico \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/howtos.md b/2020/2020-05-12_IT101-DM/slides/howtos.md new file mode 120000 index 0000000000000000000000000000000000000000..67e07850c4e13871d231fdc4749a2774cf65fd3c --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/howtos.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/howtos.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/img b/2020/2020-05-12_IT101-DM/slides/img new file mode 120000 index 0000000000000000000000000000000000000000..49a2865eced6b1922a9fb4f1c5cf8065f1f10c86 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/img @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/ \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/index.md b/2020/2020-05-12_IT101-DM/slides/index.md new file mode 100644 index 0000000000000000000000000000000000000000..c16924c26b3fe1d4064dfd044f760ec08fa51acf --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/index.md @@ -0,0 +1,20 @@ +# IT101 - Working with computers +<br>IT101 - Working with computers<br> +## May 12th, 2020 + +<div style="top: 6em; left: 0%; position: absolute;"> + <img src="theme/img/lcsb_bg.png"> +</div> + +<div style="top: 5em; left: 60%; position: absolute;"> + <img src="slides/img/r3-training-logo.png" height="200px"> + <br><br><br><br> + <h3></h3> + <br><br><br> + <h4> + Vilem Ded<br> + Data Steward<br> + vilem.ded@uni.lu<br> + <i>Luxembourg Centre for Systems Biomedicine</i> + </h4> +</div> diff --git a/2020/2020-05-12_IT101-DM/slides/ingestion.md b/2020/2020-05-12_IT101-DM/slides/ingestion.md new file mode 120000 index 0000000000000000000000000000000000000000..05eea4bb716157d10f0da6a03388def8ec26bbc0 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/ingestion.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/ingestion.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/introduction.md b/2020/2020-05-12_IT101-DM/slides/introduction.md new file mode 120000 index 0000000000000000000000000000000000000000..4b28996cbc4a67efe217f4e8faf785179bb2c93a --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/introduction.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/introduction.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/list.json b/2020/2020-05-12_IT101-DM/slides/list.json new file mode 120000 index 0000000000000000000000000000000000000000..1302be9d4466a9f5a41e41f83ae03619362a702b --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/list.json @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/list.json \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/overview.md b/2020/2020-05-12_IT101-DM/slides/overview.md new file mode 120000 index 0000000000000000000000000000000000000000..db510e2e96f4ef9708e8b5f919169676dfd6e0cb --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/overview.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/overview.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/problem_solving.md b/2020/2020-05-12_IT101-DM/slides/problem_solving.md new file mode 120000 index 0000000000000000000000000000000000000000..66f58da4e55d13355d6a8064319e2b934dc5b551 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/problem_solving.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/problem_solving.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/r3_group.md b/2020/2020-05-12_IT101-DM/slides/r3_group.md new file mode 100644 index 0000000000000000000000000000000000000000..f9281d78398689f2ea662aa1878f480eecd6d81d --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/r3_group.md @@ -0,0 +1,133 @@ +# Responsible and Reproducible Research (R<sup>3</sup>) +## What is R<sup>3</sup>? + + +A multi-facetted change management +process built on 3 pillars: + +- R3 pathfinder + +- R3 school + +- R3 accelerator + +Common link module: R3 clinic + +<div style="top: -1em; left: 50%; position: absolute;"> + <img src="slides/img/3pillars-full.png"> +</div> + +<br> +<br> +<br> +<br> + +<aside class="notes"> +Pathfinder - policies, data management changes<br> +School - courses, howtos, trainnings<br> +Accelerator - advanced teams and their boost/support, CI/CD setup<br> +Clinic - hands-on, meetings in groups, code review + suggestions<br> +</aside> + +## R<sup>3</sup> Training + * LCSB's Monthly Data Management and Data Protection training + * ELIXIR Luxembourg's Best practices in research data management and stewardship <br> + start on 19th May 2020 - 3 x 2 day sessions <br> https://elixir-luxembourg.org/training + * R<sup>3</sup> school Git basics - every 4 months + <aside class="notes"> + Direct newcommers to this monthly training + </aside> + + + +# Responsible and Reproducible Research (R<sup>3</sup>) +<center><img src="slides/img/r3-training-logo.png" height="200px"></center> + +Your R<sup>3</sup> contacts: +<div style="display:block;text-align:center;position:relative"> +<div class="profile-container"> + + * Christophe Trefois + * <img src="slides/img/R3_profile_pictures/christophe_trefois.png"> + * R<sup>3</sup> coordination + +</div> +<div class="profile-container"> + + * Venkata Satagopam + * <img src="slides/img/R3_profile_pictures/venkata_satagopam.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Reinhard Schneider + * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png"> + * Head of Bioinformatics Core + +</div> +<div class="profile-container"> + + * Pinar Alper + * <img src="slides/img/R3_profile_pictures/pinar_alper.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Yohan Yarosz</li> + * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Laurent Heirendt</li> + * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png"> + * Git, CI + +</div> +<div class="profile-container"> + + * Wei Gu</li> + * <img src="slides/img/R3_profile_pictures/wei_gu.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Sarah Peter</li> + * <img src="slides/img/R3_profile_pictures/sarah_peter.png"> + * HPC + +</div> +<div class="profile-container"> + + * Vilem Ded</li> + * <img src="slides/img/R3_profile_pictures/vilem_ded.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Noua Toukourou</li> + * <img src="slides/img/R3_profile_pictures/noua_toukourou.png"> + * R<sup>3</sup> Core + +</div> +<div class="profile-container"> + + * Alexey Kolodkin</li> + * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png"> + * Data steward + +</div> +<div class="profile-container"> + + * Maharshi Vyas</li> + * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png"> + * R<sup>3</sup> Core + +</div> + +</div> diff --git a/2020/2020-05-12_IT101-DM/slides/reproducibility.md b/2020/2020-05-12_IT101-DM/slides/reproducibility.md new file mode 120000 index 0000000000000000000000000000000000000000..3c2445cfaf26dcb66e8ee207dd6465699625e33e --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/reproducibility.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/reproducibility.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg b/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg new file mode 120000 index 0000000000000000000000000000000000000000..94f5ee71a64577ee592b5f9ea00ccd20a51ba60c --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/rudi_balling.jpg @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/img/rudi_balling.jpg \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/storage_setup.md b/2020/2020-05-12_IT101-DM/slides/storage_setup.md new file mode 120000 index 0000000000000000000000000000000000000000..d5363b000cd021c4ab72a4a9eeb90d77f304ed47 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/storage_setup.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/storage_setup.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/thanks.md b/2020/2020-05-12_IT101-DM/slides/thanks.md new file mode 120000 index 0000000000000000000000000000000000000000..c81123046f3344f76f0902b149a4d9d7c070c184 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/thanks.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/thanks.md \ No newline at end of file diff --git a/2020/2020-05-12_IT101-DM/slides/visualization.md b/2020/2020-05-12_IT101-DM/slides/visualization.md new file mode 120000 index 0000000000000000000000000000000000000000..82924b907833767bbd9460a245902e36775084a6 --- /dev/null +++ b/2020/2020-05-12_IT101-DM/slides/visualization.md @@ -0,0 +1 @@ +../../2020-03-12_IT101-DM/slides/visualization.md \ No newline at end of file