Hello,
I would like to run PathoFact using my local SLURM cluster but it's not clear to me how to run the provided example.
Looking at cluster.yaml
, I have to modify parameters to match my own cluster. I have edited partition, but I don't normally set the -q
parameter. Can I delete the quality parameter?
Thanks, Ben
Hello,
Thanks for making PathoFact, it's awesome!
I ran into a small problem matching up output reports to the CARD database. Sometimes gene names change over time. It would be easier if we had access to BEST_ARO_HIT
in the output reports
Thanks, Ben
Hello,
Thanks for releasing PathoFact, it is a very nice piece of software
I'm experiencing this issue, and I think DeepVirFinder is causing it. I requested a maximum of 16 cores used on my server:
See here for a possible explanation
Thanks, Ben