core tagshttps://git-r3lab.uni.lu/minerva/core/-/tags2024-03-14T12:20:07+01:00https://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beat.6v17.0.0-beat.6<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-4:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Bug fix (regression): when caching data on project upload annotation links</span>
<span id="LC2" class="line" lang="plaintext"> were not present (#2012)</span></code></pre>
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</div>2024-03-14T12:20:07+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beat.5v17.0.0-beat.5<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-13:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Small improvement (regression): additional info about archive/revive</span>
<span id="LC2" class="line" lang="plaintext"> project action (#1971)</span>
<span id="LC3" class="line" lang="plaintext"> * Small improvement: when minerva shutdowns unexpectedly try to restart</span>
<span id="LC4" class="line" lang="plaintext"> minerva for at most 3 times within 10 minutes (#2009)</span>
<span id="LC5" class="line" lang="plaintext"> * Bug fix (regression): orcid id can have 'X' in the last position (#1991)</span>
<span id="LC6" class="line" lang="plaintext"> * Bug fix (regression): orcid id should be unique only for non-empty strings</span>
<span id="LC7" class="line" lang="plaintext"> (#2005)</span>
<span id="LC8" class="line" lang="plaintext"> * Bug fix (regression): logout caused a lot of error logs in the server</span>
<span id="LC9" class="line" lang="plaintext"> (#1999)</span>
<span id="LC10" class="line" lang="plaintext"> * Bug fix (regression): when there is an issue with postgres (restart of</span>
<span id="LC11" class="line" lang="plaintext"> database/maintenance) try to recover broken connections (#2009)</span></code></pre>
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</div>2024-02-29T14:37:05+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beta.4v17.0.0-beta.4<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-13:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Small improvement: revive/archive project button moved to edit project</span>
<span id="LC2" class="line" lang="plaintext"> dialog (#1971)</span>
<span id="LC3" class="line" lang="plaintext"> * Bug fix (regression): activating user without email produced an error</span>
<span id="LC4" class="line" lang="plaintext"> * Bug fix (regression): orcid validation did not accept empty string which</span>
<span id="LC5" class="line" lang="plaintext"> was breaking update of a user (#1991, #1973, #2001)</span>
<span id="LC6" class="line" lang="plaintext"> * Bug fix (regression): SIGN UP button was visible even when it was not</span>
<span id="LC7" class="line" lang="plaintext"> possible (#1635)</span>
<span id="LC8" class="line" lang="plaintext"> * Bug fix (regression): orcid validation error provides proper message</span>
<span id="LC9" class="line" lang="plaintext"> (#1991, #2000)</span>
<span id="LC10" class="line" lang="plaintext"> * Bug fix (regression): update of project upload status did not appear in</span>
<span id="LC11" class="line" lang="plaintext"> the admin panel (#1992)</span></code></pre>
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</div>2024-02-22T07:20:05+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.4.1v16.4.1<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-3:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Bug fix: unregister from minerva net was impossible (#1998)</span></code></pre>
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</div>2024-02-20T11:50:07+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beta.3v17.0.0-beta.3<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-25:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Small improvement: orcid validation added (#1991)</span>
<span id="LC2" class="line" lang="plaintext"> * Small improvement: JAVA_ARGS in /etc/minerva/minerva.properties are used</span>
<span id="LC3" class="line" lang="plaintext"> when starting minerva (#1988)</span>
<span id="LC4" class="line" lang="plaintext"> * Bug fix (regression): debian/ubuntu upgrade from upgraded version from 16.4</span>
<span id="LC5" class="line" lang="plaintext"> was not working properly - apt-get install was failing (#1985)</span>
<span id="LC6" class="line" lang="plaintext"> * Bug fix (regression): authentication session cookie was incidentally renamed</span>
<span id="LC7" class="line" lang="plaintext"> to JSESSIONID - it's back MINERVA_AUTH_TOKEN (#1984)</span>
<span id="LC8" class="line" lang="plaintext"> * Bug fix: HGNC changed url format - all identifiers.org links must be</span>
<span id="LC9" class="line" lang="plaintext"> refreshed (#1696)</span>
<span id="LC10" class="line" lang="plaintext"> * Bug fix: (regression) sending email when activating user caused issues</span>
<span id="LC11" class="line" lang="plaintext"> (#1973)</span>
<span id="LC12" class="line" lang="plaintext"> * Bug fix: Sign up is visible everywhere in minerva where user can login.</span>
<span id="LC13" class="line" lang="plaintext"> When signup is visible request an account is invisible (#1635)</span>
<span id="LC14" class="line" lang="plaintext"> * Bug fix: (regression) cache refresh did not work in production (#1989)</span>
<span id="LC15" class="line" lang="plaintext"> * Bug fix: (regression) pending create project jobs were blocking start of</span>
<span id="LC16" class="line" lang="plaintext"> minerva application (#1986)</span>
<span id="LC17" class="line" lang="plaintext"> * Bug fix: (regression) uploading project produces a lot of errors like:</span>
<span id="LC18" class="line" lang="plaintext"> Problem with checking property:</span>
<span id="LC19" class="line" lang="plaintext"> private final byte java.lang.String.coder (#1983)</span>
<span id="LC20" class="line" lang="plaintext"> * Bug fix: (regression) API docs did not contain generated content (#1983)</span>
<span id="LC21" class="line" lang="plaintext"> * Bug fix: when browsing map without background guest user was able to click</span>
<span id="LC22" class="line" lang="plaintext"> add overlay button (#1990)</span>
<span id="LC23" class="line" lang="plaintext"> * Bug fix: invalid columns were marked as sortable in user list panel (#1993)</span></code></pre>
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</div>2024-02-15T16:44:06+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beta.2v17.0.0-beta.2<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-4:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext">Bug fix (regression): minerva was very slow in production due to cache</span>
<span id="LC2" class="line" lang="plaintext"> issue (#1987)</span></code></pre>
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</div>2024-02-13T10:47:32+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beta.1v17.0.0-beta.1<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-20:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Bug fix (regression): problem with sending emails caused issues when</span>
<span id="LC2" class="line" lang="plaintext"> uploading new project (#1976), updating user info (#1970, #1973)</span>
<span id="LC3" class="line" lang="plaintext"> * Bug fix (regression): orcid login redirect was invalid (#1923)</span>
<span id="LC4" class="line" lang="plaintext"> * Bug fix (regression): link to API docs did not work (#1975)</span>
<span id="LC5" class="line" lang="plaintext"> * Bug fix (regression): static files should be accessed using</span>
<span id="LC6" class="line" lang="plaintext"> domain.name/minerva/resources/ instead of domain.name/resources/ (#1963)</span>
<span id="LC7" class="line" lang="plaintext"> * Bug fix (regression): updating own data/new user data in admin panel made</span>
<span id="LC8" class="line" lang="plaintext"> account disabled (#1635)</span>
<span id="LC9" class="line" lang="plaintext"> * Bug fix (regression): accepting ToS was impossible (#1974)</span>
<span id="LC10" class="line" lang="plaintext"> * Bug fix (regression): export page did not work (#1965)</span>
<span id="LC11" class="line" lang="plaintext"> * Bug fix (regression): when queue handler for refresh cache had an issue</span>
<span id="LC12" class="line" lang="plaintext"> uploading projects/ reviving projects were not handled (#1981, #1976,</span>
<span id="LC13" class="line" lang="plaintext"> #1972)</span>
<span id="LC14" class="line" lang="plaintext"> * Bug fix: refresh of DAPI data did not work properly (#1967)</span>
<span id="LC15" class="line" lang="plaintext"> * Bug fix: upload of invalid javascript plugin was throwing exception</span>
<span id="LC16" class="line" lang="plaintext"> (#1964)</span>
<span id="LC17" class="line" lang="plaintext"> * Bug fix: UCSC changed the way that data is accessed and genomic download</span>
<span id="LC18" class="line" lang="plaintext"> stopped working (#1979)</span></code></pre>
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</div>2024-02-09T12:47:40+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-beta.0v17.0.0-beta.0<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-49:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Backward incompatibility: tomcat dependency removed (#1530) </span>
<span id="LC2" class="line" lang="plaintext"> * Backward incompatibility: functionality of String Annotator moved to</span>
<span id="LC3" class="line" lang="plaintext"> Uniprot Annotator as they were using the same source database (#1629)</span>
<span id="LC4" class="line" lang="plaintext"> * Backward incompatibility: generating of pdf does not use itext (#1043)</span>
<span id="LC5" class="line" lang="plaintext"> * Backward incompatibility: select mode removed (#1547)</span>
<span id="LC6" class="line" lang="plaintext"> * Backward incompatibility: Split semantic zoom removed (#1682)</span>
<span id="LC7" class="line" lang="plaintext"> * Backward incompatibility: support for TransparencyZoomLevelVisibility</span>
<span id="LC8" class="line" lang="plaintext"> removed (SemanticZoomLevelTransparency should be used) (#1552)</span>
<span id="LC9" class="line" lang="plaintext"> * Backward incompatibility: "don't care" residues are renamed to</span>
<span id="LC10" class="line" lang="plaintext"> "unspecified" (#1634)</span>
<span id="LC11" class="line" lang="plaintext"> * Backward incompatibility: after uploading data overlay the summary email</span>
<span id="LC12" class="line" lang="plaintext"> will not be sent anymore (#1653)</span>
<span id="LC13" class="line" lang="plaintext"> * Backward incompatibility: CAN_CREATE_OVERLAYS permission removed - every</span>
<span id="LC14" class="line" lang="plaintext"> user has possibility to create accounts (#1658)</span>
<span id="LC15" class="line" lang="plaintext"> * Backward incompatibility: functionality of Stitch Annotator moved to</span>
<span id="LC16" class="line" lang="plaintext"> Chebi Annotator as they were using the same source database (#1628)</span>
<span id="LC17" class="line" lang="plaintext"> * Backward incompatibility: merge API endpoint clears bioEntity notes by</span>
<span id="LC18" class="line" lang="plaintext"> default, there is possibility to override this behaviour by using custom</span>
<span id="LC19" class="line" lang="plaintext"> header: "X-MINERVA-KEEP-NOTES: true" (#1810)</span>
<span id="LC20" class="line" lang="plaintext"> * Improvement: login via orcid ID oauth2 is supported (#1923)</span>
<span id="LC21" class="line" lang="plaintext"> * Improvement: user registration is added (#1635)</span>
<span id="LC22" class="line" lang="plaintext"> * Improvement: possibility to archive project (#1949)</span>
<span id="LC23" class="line" lang="plaintext"> * Improvement: minerva is compatible with java 17</span>
<span id="LC24" class="line" lang="plaintext"> * Improvement: cached data is automatically refreshed after information is</span>
<span id="LC25" class="line" lang="plaintext"> expired, for example information from drug db (#1548)</span>
<span id="LC26" class="line" lang="plaintext"> * Small improvement: inchi and inchikey in chemicals are represented as</span>
<span id="LC27" class="line" lang="plaintext"> annotation (#1659)</span>
<span id="LC28" class="line" lang="plaintext"> * Small improvement: when exporting to SBGN provide dimension of the map</span>
<span id="LC29" class="line" lang="plaintext"> * Small improvement: in admin panel changing details of user are reflected</span>
<span id="LC30" class="line" lang="plaintext"> automatically in the list of user (#1542)</span>
<span id="LC31" class="line" lang="plaintext"> * Small improvement: export to sbgn provide map id</span>
<span id="LC32" class="line" lang="plaintext"> * Small improvement: export/import to GPML supports map name</span>
<span id="LC33" class="line" lang="plaintext"> * Small improvement: project API provides info if the project is defined as</span>
<span id="LC34" class="line" lang="plaintext"> default in config (#1423)</span>
<span id="LC35" class="line" lang="plaintext"> * Small improvement: border width from source file (like CellDesigner) is</span>
<span id="LC36" class="line" lang="plaintext"> used when drawing elements (#1865)</span>
<span id="LC37" class="line" lang="plaintext"> * Bug fix: when importing from CellDesigner coordinates of coding region in</span>
<span id="LC38" class="line" lang="plaintext"> a gene were incorrectly computed</span>
<span id="LC39" class="line" lang="plaintext"> * Bug fix: export to SBML did not provide text label for CodingRegion and</span>
<span id="LC40" class="line" lang="plaintext"> RegulatoryRegion</span>
<span id="LC41" class="line" lang="plaintext"> * Bug fix: export as pdf map with some glyphs was broken (#1563)</span>
<span id="LC42" class="line" lang="plaintext"> * Bug fix: export to CellDesigner should not put notes in Antisense RNA,</span>
<span id="LC43" class="line" lang="plaintext"> Gene and RNA - the notes are already in Species (#1810)</span>
<span id="LC44" class="line" lang="plaintext"> * Bug fix: adding new project format *.sbml did not change Type in Add</span>
<span id="LC45" class="line" lang="plaintext"> project window (#1118)</span>
<span id="LC46" class="line" lang="plaintext"> * Bug fix: reactions imported from CellDesigner and attached to the corner of</span>
<span id="LC47" class="line" lang="plaintext"> drug were misaligned (#1479)</span></code></pre>
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</div>2024-02-06T12:21:49+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v17.0.0-alpha.0v17.0.0-alpha.0Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.4.0v16.4.0<ul data-sourcepos="1:3-19:11" dir="auto">
<li data-sourcepos="1:3-1:70">Small improvement: performance of project removal improved (<a href="/minerva/core/-/issues/1910" data-reference-type="issue" data-original="#1910" data-link="false" data-link-reference="false" data-project="499" data-issue="19953" data-project-path="minerva/core" data-iid="1910" data-issue-type="issue" data-container="body" data-placement="top" title="speed up project removal" class="gfm gfm-issue">#1910</a>)</li>
<li data-sourcepos="2:3-3:33">Small improvement: performance of list elements by included/excluded
compartments improved (<a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>)</li>
<li data-sourcepos="4:3-4:74">Small improvement: loading time of export page improved (<a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>, <a href="/minerva/core/-/issues/1839" data-reference-type="issue" data-original="#1839" data-link="false" data-link-reference="false" data-project="499" data-issue="10896" data-project-path="minerva/core" data-iid="1839" data-issue-type="issue" data-container="body" data-placement="top" title="Could we add 'loading' icon in EXPORT tab ?" class="gfm gfm-issue">#1839</a>)</li>
<li data-sourcepos="5:3-6:48">Small improvement: performance of fetching elements from database improved
(for example when searching elements, <a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>)</li>
<li data-sourcepos="7:3-7:74">Small improvement: when exporting to SBGN provide dimension of the map</li>
<li data-sourcepos="8:3-8:52">Small improvement: export to sbgn provide map id</li>
<li data-sourcepos="9:3-9:62">Small improvement: export/import to GPML supports map name</li>
<li data-sourcepos="10:3-11:27">Small improvement: allow ADMIN and CURATOR to reorder public data overlays
in browser view (<a href="/minerva/core/-/issues/1925" data-reference-type="issue" data-original="#1925" data-link="false" data-link-reference="false" data-project="499" data-issue="20076" data-project-path="minerva/core" data-iid="1925" data-issue-type="issue" data-container="body" data-placement="top" title='Wrong ordering of "general overlays"' class="gfm gfm-issue">#1925</a>)</li>
<li data-sourcepos="12:3-12:69">Small improvement: unused files are removed once per week (<a href="/minerva/core/-/issues/1912" data-reference-type="issue" data-original="#1912" data-link="false" data-link-reference="false" data-project="499" data-issue="19979" data-project-path="minerva/core" data-iid="1912" data-issue-type="issue" data-container="body" data-placement="top" title="periodically remove unused uploaded files from database" class="gfm gfm-issue">#1912</a>)</li>
<li data-sourcepos="13:3-14:36">Bug fix: when importing from CellDesigner coordinates of coding region in
a gene were incorrectly computed</li>
<li data-sourcepos="15:3-16:20">Bug fix: export to SBML did not provide text label for CodingRegion and
RegulatoryRegion</li>
<li data-sourcepos="17:3-17:73">Bug fix: center map and submaps when center button is pressed (<a href="/minerva/core/-/issues/1939" data-reference-type="issue" data-original="#1939" data-link="false" data-link-reference="false" data-project="499" data-issue="20150" data-project-path="minerva/core" data-iid="1939" data-issue-type="issue" data-container="body" data-placement="top" title="Centering should also center the submaps" class="gfm gfm-issue">#1939</a>)</li>
<li data-sourcepos="18:3-19:11">Bug fix: upload of the project was setting the map name to project name
(<a href="/minerva/core/-/issues/1946" data-reference-type="issue" data-original="#1946" data-link="false" data-link-reference="false" data-project="499" data-issue="20198" data-project-path="minerva/core" data-iid="1946" data-issue-type="issue" data-container="body" data-placement="top" title="upload of project sets the map name to project name" class="gfm gfm-issue">#1946</a>)</li>
</ul>2023-12-21T10:47:13+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.4.0-alpha.0v16.4.0-alpha.0<ul data-sourcepos="1:3-17:69" dir="auto">
<li data-sourcepos="1:3-1:70">Small improvement: performance of project removal improved (<a href="/minerva/core/-/issues/1910" data-reference-type="issue" data-original="#1910" data-link="false" data-link-reference="false" data-project="499" data-issue="19953" data-project-path="minerva/core" data-iid="1910" data-issue-type="issue" data-container="body" data-placement="top" title="speed up project removal" class="gfm gfm-issue">#1910</a>)</li>
<li data-sourcepos="2:3-3:33">Small improvement: performance of list elements by included/excluded
compartments improved (<a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>)</li>
<li data-sourcepos="4:3-4:74">Small improvement: loading time of export page improved (<a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>, <a href="/minerva/core/-/issues/1839" data-reference-type="issue" data-original="#1839" data-link="false" data-link-reference="false" data-project="499" data-issue="10896" data-project-path="minerva/core" data-iid="1839" data-issue-type="issue" data-container="body" data-placement="top" title="Could we add 'loading' icon in EXPORT tab ?" class="gfm gfm-issue">#1839</a>)</li>
<li data-sourcepos="5:3-6:48">Small improvement: performance of fetching elements from database improved
(for example when searching elements, <a href="/minerva/core/-/issues/1911" data-reference-type="issue" data-original="#1911" data-link="false" data-link-reference="false" data-project="499" data-issue="19968" data-project-path="minerva/core" data-iid="1911" data-issue-type="issue" data-container="body" data-placement="top" title="speed up query of element" class="gfm gfm-issue">#1911</a>)</li>
<li data-sourcepos="7:3-7:74">Small improvement: when exporting to SBGN provide dimension of the map</li>
<li data-sourcepos="8:3-8:52">Small improvement: export to sbgn provide map id</li>
<li data-sourcepos="9:3-9:62">Small improvement: export/import to GPML supports map name</li>
<li data-sourcepos="10:3-11:27">Small improvement: allow ADMIN and CURATOR to reorder public data overlays
in browser view (<a href="/minerva/core/-/issues/1925" data-reference-type="issue" data-original="#1925" data-link="false" data-link-reference="false" data-project="499" data-issue="20076" data-project-path="minerva/core" data-iid="1925" data-issue-type="issue" data-container="body" data-placement="top" title='Wrong ordering of "general overlays"' class="gfm gfm-issue">#1925</a>)</li>
<li data-sourcepos="12:3-13:36">Bug fix: when importing from CellDesigner coordinates of coding region in
a gene were incorrectly computed</li>
<li data-sourcepos="14:3-15:20">Bug fix: export to SBML did not provide text label for CodingRegion and
RegulatoryRegion</li>
<li data-sourcepos="16:3-16:73">Bug fix: center map and submaps when center button is pressed (<a href="/minerva/core/-/issues/1939" data-reference-type="issue" data-original="#1939" data-link="false" data-link-reference="false" data-project="499" data-issue="20150" data-project-path="minerva/core" data-iid="1939" data-issue-type="issue" data-container="body" data-placement="top" title="Centering should also center the submaps" class="gfm gfm-issue">#1939</a>)</li>
<li data-sourcepos="17:3-17:69">Small improvement: unused files are removed once per week (<a href="/minerva/core/-/issues/1912" data-reference-type="issue" data-original="#1912" data-link="false" data-link-reference="false" data-project="499" data-issue="19979" data-project-path="minerva/core" data-iid="1912" data-issue-type="issue" data-container="body" data-placement="top" title="periodically remove unused uploaded files from database" class="gfm gfm-issue">#1912</a>)</li>
</ul>2023-12-14T12:43:35+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.3.0v16.3.0<ul data-sourcepos="1:3-26:39" dir="auto">
<li data-sourcepos="1:3-1:64">Small improvement: new miriam type is handled: BioKC (<a href="/minerva/core/-/issues/1944" data-reference-type="issue" data-original="#1944" data-link="false" data-link-reference="false" data-project="499" data-issue="20159" data-project-path="minerva/core" data-iid="1944" data-issue-type="issue" data-container="body" data-placement="top" title="Add BioKC identifiers.org type" class="gfm gfm-issue">#1944</a>)</li>
<li data-sourcepos="2:3-2:76">Small improvement: possibility to find anchors by the target map (<a href="/minerva/core/-/issues/1851" data-reference-type="issue" data-original="#1851" data-link="false" data-link-reference="false" data-project="499" data-issue="10958" data-project-path="minerva/core" data-iid="1851" data-issue-type="issue" data-container="body" data-placement="top" title="search and mark submaps anchors on the map" class="gfm gfm-issue">#1851</a>)</li>
<li data-sourcepos="3:3-3:73">Small improvement: import/export of GPML support authors data (<a href="/minerva/core/-/issues/1724" data-reference-type="issue" data-original="#1724" data-link="false" data-link-reference="false" data-project="499" data-issue="10047" data-project-path="minerva/core" data-iid="1724" data-issue-type="issue" data-container="body" data-placement="top" title="import/export authors from GPML" class="gfm gfm-issue">#1724</a>)</li>
<li data-sourcepos="4:3-4:76">Small improvement: import/export of SBGN-ML support authors data (<a href="/minerva/core/-/issues/1725" data-reference-type="issue" data-original="#1725" data-link="false" data-link-reference="false" data-project="499" data-issue="10048" data-project-path="minerva/core" data-iid="1725" data-issue-type="issue" data-container="body" data-placement="top" title="import/export authors from SBGN-ML" class="gfm gfm-issue">#1725</a>)</li>
<li data-sourcepos="5:3-5:69">Small improvement: import/export of SBGN-ML support map dimension</li>
<li data-sourcepos="6:3-6:69">Small improvement: import/export of GPML support Last-Modify date</li>
<li data-sourcepos="7:3-8:39">Small improvement: import from GPML parse information about KEGG Pathway
Identifier (like in pathway WP2118)</li>
<li data-sourcepos="9:3-10:47">Small improvement: import from GPML parse information about Reactome
Pathway Identifier (like in pathway WP3165)</li>
<li data-sourcepos="11:3-11:78">Small improvement: LOADING icon when initializing export TAB added (<a href="/minerva/core/-/issues/1839" data-reference-type="issue" data-original="#1839" data-link="false" data-link-reference="false" data-project="499" data-issue="10896" data-project-path="minerva/core" data-iid="1839" data-issue-type="issue" data-container="body" data-placement="top" title="Could we add 'loading' icon in EXPORT tab ?" class="gfm gfm-issue">#1839</a>)</li>
<li data-sourcepos="12:3-12:72">Small improvement: allow to login to DAPI by press key Enter (<a href="/minerva/core/-/issues/1853" data-reference-type="issue" data-original="#1853" data-link="false" data-link-reference="false" data-project="499" data-issue="10963" data-project-path="minerva/core" data-iid="1853" data-issue-type="issue" data-container="body" data-placement="top" title="allow to login to DAPI by press key Enter" class="gfm gfm-issue">#1853</a>)</li>
<li data-sourcepos="13:3-13:67">Small improvement: link to home of API-docs in API-docs (<a href="/minerva/core/-/issues/1779" data-reference-type="issue" data-original="#1779" data-link="false" data-link-reference="false" data-project="499" data-issue="10445" data-project-path="minerva/core" data-iid="1779" data-issue-type="issue" data-container="body" data-placement="top" title="Add 'back' navigation in api docs table of content" class="gfm gfm-issue">#1779</a>)</li>
<li data-sourcepos="14:3-15:11">Small improvement: provide server-side Stack Trace when reporting error
(<a href="/minerva/core/-/issues/1792" data-reference-type="issue" data-original="#1792" data-link="false" data-link-reference="false" data-project="499" data-issue="10527" data-project-path="minerva/core" data-iid="1792" data-issue-type="issue" data-container="body" data-placement="top" title="error report sent to minerva-net should contain server side stacktrace" class="gfm gfm-issue">#1792</a>)</li>
<li data-sourcepos="16:3-16:69">Small improvement: merge API can produce zip if requested (<a href="/minerva/core/-/issues/1773" data-reference-type="issue" data-original="#1773" data-link="false" data-link-reference="false" data-project="499" data-issue="10412" data-project-path="minerva/core" data-iid="1773" data-issue-type="issue" data-container="body" data-placement="top" title='converter merge API call should allow to specify "accept" as "application/zip"' class="gfm gfm-issue">#1773</a>)</li>
<li data-sourcepos="17:3-17:73">Small improvement: performance of returning elements improved (<a href="/minerva/core/-/issues/1880" data-reference-type="issue" data-original="#1880" data-link="false" data-link-reference="false" data-project="499" data-issue="19650" data-project-path="minerva/core" data-iid="1880" data-issue-type="issue" data-container="body" data-placement="top" title="API search by type is slow" class="gfm gfm-issue">#1880</a>)</li>
<li data-sourcepos="18:3-19:78">Bug fix: when uploading SBML file without auto-resize dimension of the map
was set to values that could not be visualized properly in browser (#1914)</li>
<li data-sourcepos="20:3-21:60">Bug fix: uniprot urls (for example <a href="https://purl.uniprot.org/uniprot/Q8NEZ2" rel="nofollow noreferrer noopener" target="_blank">https://purl.uniprot.org/uniprot/Q8NEZ2</a>)
passed as miriam identifiers are parsed properly (<a href="/minerva/core/-/issues/1915" data-reference-type="issue" data-original="#1915" data-link="false" data-link-reference="false" data-project="499" data-issue="20006" data-project-path="minerva/core" data-iid="1915" data-issue-type="issue" data-container="body" data-placement="top" title="parsing of uniprot url in miriam identifier does not work" class="gfm gfm-issue">#1915</a>)</li>
<li data-sourcepos="22:3-22:58">Bug fix: export of map annotation in SBGN did not work</li>
<li data-sourcepos="23:3-23:71">Bug fix: import/export of SBGN-ML authors data did not work (<a href="/minerva/core/-/issues/1725" data-reference-type="issue" data-original="#1725" data-link="false" data-link-reference="false" data-project="499" data-issue="10048" data-project-path="minerva/core" data-iid="1725" data-issue-type="issue" data-container="body" data-placement="top" title="import/export authors from SBGN-ML" class="gfm gfm-issue">#1725</a>)</li>
<li data-sourcepos="24:3-24:57">Bug fix: upload of Wikipathways WP4657 was impossible</li>
<li data-sourcepos="25:3-26:39">Bug fix: special character in annotation id (like "HGNC_SYMBOL:SNC&A"
generated corrupted GPML on export)</li>
</ul>2023-12-14T08:05:09+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.3.0-beta.3v16.3.0-beta.3<ul data-sourcepos="1:1-1:62" dir="auto">
<li data-sourcepos="1:1-1:62">Small improvement: new miriam type is handled: BioKC (<a href="/minerva/core/-/issues/1944" data-reference-type="issue" data-original="#1944" data-link="false" data-link-reference="false" data-project="499" data-issue="20159" data-project-path="minerva/core" data-iid="1944" data-issue-type="issue" data-container="body" data-placement="top" title="Add BioKC identifiers.org type" class="gfm gfm-issue">#1944</a>)</li>
</ul>2023-12-07T16:20:36+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.3.0-beta.2v16.3.0-beta.2<ul data-sourcepos="1:3-2:78" dir="auto">
<li data-sourcepos="1:3-2:78">Bug fix: when uploading SBML file without auto-resize dimension of the map
was set to values that could not be visualized properly in browser (#1914)</li>
</ul>2023-12-05T12:26:37+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.3.0-beta.1v16.3.0-beta.1<div class="gl-relative markdown-code-block js-markdown-code">
<pre data-sourcepos="1:1-9:3" class="code highlight js-syntax-highlight language-plaintext" lang="plaintext" v-pre="true"><code><span id="LC1" class="line" lang="plaintext"> * Bug fix: when uploading SBML file without auto-resize dimension of the map</span>
<span id="LC2" class="line" lang="plaintext"> was set to values that could not be visualized properly in browser (#1914)</span>
<span id="LC3" class="line" lang="plaintext"> * Bug fix: uniprot urls (for example https://purl.uniprot.org/uniprot/Q8NEZ2)</span>
<span id="LC4" class="line" lang="plaintext"> passed as miriam identifiers are parsed properly (#1915)</span>
<span id="LC5" class="line" lang="plaintext"> * Bug fix: export of map annotation in SBGN did not work</span>
<span id="LC6" class="line" lang="plaintext"> * Bug fix: import/export of SBGN-ML authors data did not work (#1725)</span>
<span id="LC7" class="line" lang="plaintext"></span></code></pre>
<copy-code></copy-code>
</div>2023-11-28T12:15:46+01:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.3.0-beta.0v16.3.0-beta.0<ul data-sourcepos="1:3-19:39" dir="auto">
<li data-sourcepos="1:3-1:76">Small improvement: possibility to find anchors by the target map (<a href="/minerva/core/-/issues/1851" data-reference-type="issue" data-original="#1851" data-link="false" data-link-reference="false" data-project="499" data-issue="10958" data-project-path="minerva/core" data-iid="1851" data-issue-type="issue" data-container="body" data-placement="top" title="search and mark submaps anchors on the map" class="gfm gfm-issue">#1851</a>)</li>
<li data-sourcepos="2:3-2:73">Small improvement: import/export of GPML support authors data (<a href="/minerva/core/-/issues/1724" data-reference-type="issue" data-original="#1724" data-link="false" data-link-reference="false" data-project="499" data-issue="10047" data-project-path="minerva/core" data-iid="1724" data-issue-type="issue" data-container="body" data-placement="top" title="import/export authors from GPML" class="gfm gfm-issue">#1724</a>)</li>
<li data-sourcepos="3:3-3:76">Small improvement: import/export of SBGN-ML support authors data (<a href="/minerva/core/-/issues/1725" data-reference-type="issue" data-original="#1725" data-link="false" data-link-reference="false" data-project="499" data-issue="10048" data-project-path="minerva/core" data-iid="1725" data-issue-type="issue" data-container="body" data-placement="top" title="import/export authors from SBGN-ML" class="gfm gfm-issue">#1725</a>)</li>
<li data-sourcepos="4:3-4:69">Small improvement: import/export of SBGN-ML support map dimension</li>
<li data-sourcepos="5:3-5:69">Small improvement: import/export of GPML support Last-Modify date</li>
<li data-sourcepos="6:3-7:39">Small improvement: import from GPML parse information about KEGG Pathway
Identifier (like in pathway WP2118)</li>
<li data-sourcepos="8:3-9:47">Small improvement: import from GPML parse information about Reactome
Pathway Identifier (like in pathway WP3165)</li>
<li data-sourcepos="10:3-10:78">Small improvement: LOADING icon when initializing export TAB added (<a href="/minerva/core/-/issues/1839" data-reference-type="issue" data-original="#1839" data-link="false" data-link-reference="false" data-project="499" data-issue="10896" data-project-path="minerva/core" data-iid="1839" data-issue-type="issue" data-container="body" data-placement="top" title="Could we add 'loading' icon in EXPORT tab ?" class="gfm gfm-issue">#1839</a>)</li>
<li data-sourcepos="11:3-11:72">Small improvement: allow to login to DAPI by press key Enter (<a href="/minerva/core/-/issues/1853" data-reference-type="issue" data-original="#1853" data-link="false" data-link-reference="false" data-project="499" data-issue="10963" data-project-path="minerva/core" data-iid="1853" data-issue-type="issue" data-container="body" data-placement="top" title="allow to login to DAPI by press key Enter" class="gfm gfm-issue">#1853</a>)</li>
<li data-sourcepos="12:3-12:67">Small improvement: link to home of API-docs in API-docs (<a href="/minerva/core/-/issues/1779" data-reference-type="issue" data-original="#1779" data-link="false" data-link-reference="false" data-project="499" data-issue="10445" data-project-path="minerva/core" data-iid="1779" data-issue-type="issue" data-container="body" data-placement="top" title="Add 'back' navigation in api docs table of content" class="gfm gfm-issue">#1779</a>)</li>
<li data-sourcepos="13:3-14:11">Small improvement: provide server-side Stack Trace when reporting error
(<a href="/minerva/core/-/issues/1792" data-reference-type="issue" data-original="#1792" data-link="false" data-link-reference="false" data-project="499" data-issue="10527" data-project-path="minerva/core" data-iid="1792" data-issue-type="issue" data-container="body" data-placement="top" title="error report sent to minerva-net should contain server side stacktrace" class="gfm gfm-issue">#1792</a>)</li>
<li data-sourcepos="15:3-15:69">Small improvement: merge API can produce zip if requested (<a href="/minerva/core/-/issues/1773" data-reference-type="issue" data-original="#1773" data-link="false" data-link-reference="false" data-project="499" data-issue="10412" data-project-path="minerva/core" data-iid="1773" data-issue-type="issue" data-container="body" data-placement="top" title='converter merge API call should allow to specify "accept" as "application/zip"' class="gfm gfm-issue">#1773</a>)</li>
<li data-sourcepos="16:3-16:73">Small improvement: performance of returning elements improved (<a href="/minerva/core/-/issues/1880" data-reference-type="issue" data-original="#1880" data-link="false" data-link-reference="false" data-project="499" data-issue="19650" data-project-path="minerva/core" data-iid="1880" data-issue-type="issue" data-container="body" data-placement="top" title="API search by type is slow" class="gfm gfm-issue">#1880</a>)</li>
<li data-sourcepos="17:3-17:57">Bug fix: upload of Wikipathways WP4657 was impossible</li>
<li data-sourcepos="18:3-19:39">Bug fix: special character in annotation id (like "HGNC_SYMBOL:SNC&A"
generated corrupted GPML on export)</li>
</ul>2023-10-24T12:26:02+02:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.2.13v16.2.13<ul data-sourcepos="1:3-10:11" dir="auto">
<li data-sourcepos="1:3-2:11">Bug fix: Java Assistive Technology caused randomly issues with map upload
(<a href="/minerva/core/-/issues/1681" data-reference-type="issue" data-original="#1681" data-link="false" data-link-reference="false" data-project="499" data-issue="9706" data-project-path="minerva/core" data-iid="1681" data-issue-type="issue" data-container="body" data-placement="top" title="archived file upload failed (Assistive Technology not found: org.GNOME.Accessibility.AtkWrapper)" class="gfm gfm-issue">#1681</a>)</li>
<li data-sourcepos="3:3-3:61">Bug fix: hiding data overlay could cause an error (#1909)</li>
<li data-sourcepos="4:3-4:75">Bug fix: documentation for genomics endpoints were not provided (#1879)</li>
<li data-sourcepos="5:3-6:36">Bug fix: uniprot removed information about locus id - annotation with tair
locus id stopped working (<a href="/minerva/core/-/issues/1898" data-reference-type="issue" data-original="#1898" data-link="false" data-link-reference="false" data-project="499" data-issue="19789" data-project-path="minerva/core" data-iid="1898" data-issue-type="issue" data-container="body" data-placement="top" title="uniprot changed format and mapping via locus id is not possible anymore" class="gfm gfm-issue">#1898</a>)</li>
<li data-sourcepos="7:3-8:62">Bug fix: ordering of data overlay boxes over an element was problematic when
mixing GENERAL OVERLAYS and USER-PROVIDED OVERLAYS (<a href="/minerva/core/-/issues/1895" data-reference-type="issue" data-original="#1895" data-link="false" data-link-reference="false" data-project="499" data-issue="19757" data-project-path="minerva/core" data-iid="1895" data-issue-type="issue" data-container="body" data-placement="top" title="Nonintuitive ordering of data overlay boxes over an element" class="gfm gfm-issue">#1895</a>)</li>
<li data-sourcepos="9:3-10:11">Bug fix: reaction overlays used common colors when showing multiple overlays
(#1894)</li>
</ul>2023-10-19T11:44:10+02:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/v16.2.12v16.2.12<ul data-sourcepos="1:3-19:21" dir="auto">
<li data-sourcepos="1:3-2:11">Bug fix: Java Assistive Technology caused randomly issues with map upload
(<a href="/minerva/core/-/issues/1681" data-reference-type="issue" data-original="#1681" data-link="false" data-link-reference="false" data-project="499" data-issue="9706" data-project-path="minerva/core" data-iid="1681" data-issue-type="issue" data-container="body" data-placement="top" title="archived file upload failed (Assistive Technology not found: org.GNOME.Accessibility.AtkWrapper)" class="gfm gfm-issue">#1681</a>)</li>
<li data-sourcepos="3:3-3:73">Bug fix: non-existing user name/surname should be shown as "" (<a href="/minerva/core/-/issues/1849" data-reference-type="issue" data-original="#1849" data-link="false" data-link-reference="false" data-project="499" data-issue="10930" data-project-path="minerva/core" data-iid="1849" data-issue-type="issue" data-container="body" data-placement="top" title='"null null" displayed for anonymous user in Edit project > users' class="gfm gfm-issue">#1849</a>)</li>
<li data-sourcepos="4:3-6:11">Bug fix: when exporting elements as tab separated list selecting of columns
"Complex name" or "Compartment/Pathway name" caused exporting both of them
(<a href="/minerva/core/-/issues/1828" data-reference-type="issue" data-original="#1828" data-link="false" data-link-reference="false" data-project="499" data-issue="10795" data-project-path="minerva/core" data-iid="1828" data-issue-type="issue" data-container="body" data-placement="top" title="data export of 'Compartment/Pathway name' is also exporting 'Complex name'" class="gfm gfm-issue">#1828</a>)</li>
<li data-sourcepos="7:3-8:71">Bug fix: when returning data overlay entries empty entry (with no
identifier, name, etc.) should not be matched to everything (#1846)</li>
<li data-sourcepos="9:3-10:23">Bug fix: problem with fetching data in Firefox returned improper message
due to type (#1841)</li>
<li data-sourcepos="11:3-12:65">Bug fix: pathways were not included in "Included / Excluded
compartment/pathways" in Export elements/network list (<a href="/minerva/core/-/issues/1854" data-reference-type="issue" data-original="#1854" data-link="false" data-link-reference="false" data-project="499" data-issue="10973" data-project-path="minerva/core" data-iid="1854" data-issue-type="issue" data-container="body" data-placement="top" title='pathways are not included in "Included / Excluded compartment/pathways" in Export elements/network list' class="gfm gfm-issue">#1854</a>)</li>
<li data-sourcepos="13:3-14:11">Bug fix: Pathway with negative Z-Index and glyph should not be clickable
(<a href="/minerva/core/-/issues/1855" data-reference-type="issue" data-original="#1855" data-link="false" data-link-reference="false" data-project="499" data-issue="10975" data-project-path="minerva/core" data-iid="1855" data-issue-type="issue" data-container="body" data-placement="top" title="Pathway with Z-Index:-1 is 'clickable'" class="gfm gfm-issue">#1855</a>)</li>
<li data-sourcepos="15:3-16:22">Bug fix: clicking on selected reaction was hiding reaction participants in
left panel (<a href="/minerva/core/-/issues/1829" data-reference-type="issue" data-original="#1829" data-link="false" data-link-reference="false" data-project="499" data-issue="10796" data-project-path="minerva/core" data-iid="1829" data-issue-type="issue" data-container="body" data-placement="top" title="details of reaction's elements in left panel are missing" class="gfm gfm-issue">#1829</a>)</li>
<li data-sourcepos="17:3-19:21">Bug fix: number of publication displayed in the publication list could be
different than the number of publication visible in project info - reason
explained (<a href="/minerva/core/-/issues/1838" data-reference-type="issue" data-original="#1838" data-link="false" data-link-reference="false" data-project="499" data-issue="10895" data-project-path="minerva/core" data-iid="1838" data-issue-type="issue" data-container="body" data-placement="top" title="Re-calculate number of publications displayed in Info tab" class="gfm gfm-issue">#1838</a>)</li>
</ul>2023-10-19T07:34:49+02:00Piotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/tags/V16.2.11V16.2.11<ul data-sourcepos="1:3-20:11" dir="auto">
<li data-sourcepos="1:3-2:27">Bug fix: there was a race condition in very rare situations when exporting
to CellDesigner (<a href="/minerva/core/-/issues/1728" data-reference-type="issue" data-original="#1728" data-link="false" data-link-reference="false" data-project="499" data-issue="10059" data-project-path="minerva/core" data-iid="1728" data-issue-type="issue" data-container="body" data-placement="top" title="export to CD (might be race condition)" class="gfm gfm-issue">#1728</a>)</li>
<li data-sourcepos="3:3-3:71">Bug fix: oval coordinates were incorrect after merging maps (<a href="/minerva/core/-/issues/1837" data-reference-type="issue" data-original="#1837" data-link="false" data-link-reference="false" data-project="499" data-issue="10894" data-project-path="minerva/core" data-iid="1837" data-issue-type="issue" data-container="body" data-placement="top" title="Incorrect drawing of 'Oval' shapes in listOfSquares in celldesigner:layers" class="gfm gfm-issue">#1837</a>)</li>
<li data-sourcepos="4:3-5:31">Bug fix: when MolArt could not find protein structure then the info window
could not be closed (<a href="/minerva/core/-/issues/1848" data-reference-type="issue" data-original="#1848" data-link="false" data-link-reference="false" data-project="499" data-issue="10925" data-project-path="minerva/core" data-iid="1848" data-issue-type="issue" data-container="body" data-placement="top" title="when molart cannot find structure then the molart window cannot be closed" class="gfm gfm-issue">#1848</a>)</li>
<li data-sourcepos="6:3-7:38">Bug fix: export to CellDesigner of compartments with name containing "&"
resulted in corrupted file (<a href="/minerva/core/-/issues/1843" data-reference-type="issue" data-original="#1843" data-link="false" data-link-reference="false" data-project="499" data-issue="10906" data-project-path="minerva/core" data-iid="1843" data-issue-type="issue" data-container="body" data-placement="top" title="When pathway/compartment contains & in name, export map is corrupted" class="gfm gfm-issue">#1843</a>)</li>
<li data-sourcepos="8:3-9:34">Bug fix: export to CellDesigner of kinetic function with name containing
"&" resulted in corrupted file</li>
<li data-sourcepos="10:3-11:34">Bug fix: export to CellDesigner of kinetic parameter with name containing
"&" resulted in corrupted file</li>
<li data-sourcepos="12:3-13:34">Bug fix: export to CellDesigner of structural state with name containing
"&" resulted in corrupted file</li>
<li data-sourcepos="14:3-15:21">Bug fix: export to CellDesigner of layer with name containing "&" resulted
in corrupted file</li>
<li data-sourcepos="16:3-17:21">Bug fix: export to CellDesigner of unit with name containing "&" resulted
in corrupted file</li>
<li data-sourcepos="18:3-20:11">Bug fix: genetic variants were not added up together when colouring single
element with multiple identifiers, for example with two UniProt identifiers
(<a href="/minerva/core/-/issues/1842" data-reference-type="issue" data-original="#1842" data-link="false" data-link-reference="false" data-project="499" data-issue="10905" data-project-path="minerva/core" data-iid="1842" data-issue-type="issue" data-container="body" data-placement="top" title="Genetic variants are not added up together when colouring with two UniProts the same element" class="gfm gfm-issue">#1842</a>)</li>
</ul>2023-02-17T20:26:51+01:00Piotr Gawronpiotr.gawron@uni.luhttps://git-r3lab.uni.lu/minerva/core/-/tags/V16.2.10V16.2.10<ul data-sourcepos="1:3-21:27" dir="auto">
<li data-sourcepos="1:3-1:77">Bug fix (API documentation): typos in API documentation corrected (<a href="/minerva/core/-/issues/1806" data-reference-type="issue" data-original="#1806" data-link="false" data-link-reference="false" data-project="499" data-issue="10587" data-project-path="minerva/core" data-iid="1806" data-issue-type="issue" data-container="body" data-placement="top" title="typo in section Users description of ldapAccountAvailable" class="gfm gfm-issue">#1806</a>)</li>
<li data-sourcepos="2:3-3:42">Bug fix (API documentation): header in logout method change to keep
consistency with other methods (<a href="/minerva/core/-/issues/1806" data-reference-type="issue" data-original="#1806" data-link="false" data-link-reference="false" data-project="499" data-issue="10587" data-project-path="minerva/core" data-iid="1806" data-issue-type="issue" data-container="body" data-placement="top" title="typo in section Users description of ldapAccountAvailable" class="gfm gfm-issue">#1806</a>)</li>
<li data-sourcepos="4:3-5:31">Bug fix (API documentation): missing information about genomeId added when
adding gene mapping (<a href="/minerva/core/-/issues/1807" data-reference-type="issue" data-original="#1807" data-link="false" data-link-reference="false" data-project="499" data-issue="10588" data-project-path="minerva/core" data-iid="1807" data-issue-type="issue" data-container="body" data-placement="top" title='In "9. Add gene mapping" remove unnecessary fields and add description' class="gfm gfm-issue">#1807</a>)</li>
<li data-sourcepos="6:3-6:74">Bug fix: exporting map with data overlay coloring did not work (#1817)</li>
<li data-sourcepos="7:3-8:28">Bug fix: non-numeric character in pubmed id prevent publications from
being downloaded (#1802)</li>
<li data-sourcepos="9:3-10:24">Bug fix: line width was ignored when fetching information about advanced
data overlay (<a href="/minerva/core/-/issues/1742" data-reference-type="issue" data-original="#1742" data-link="false" data-link-reference="false" data-project="499" data-issue="10154" data-project-path="minerva/core" data-iid="1742" data-issue-type="issue" data-container="body" data-placement="top" title='"line_width" column for advanced overlay is not working' class="gfm gfm-issue">#1742</a>)</li>
<li data-sourcepos="11:3-12:34">Bug fix: global xml namespace definition caused MINERVA to fail on
processing model notes (<a href="/minerva/core/-/issues/1804" data-reference-type="issue" data-original="#1804" data-link="false" data-link-reference="false" data-project="499" data-issue="10583" data-project-path="minerva/core" data-iid="1804" data-issue-type="issue" data-container="body" data-placement="top" title="global xml namespace definition causes MINERVA to fail on processing model notes" class="gfm gfm-issue">#1804</a>)</li>
<li data-sourcepos="13:3-14:24">Bug fix: genetic data overlays from zip input did not contain proper info
about genome (#1815)</li>
<li data-sourcepos="15:3-17:26">Bug fix: overlay genetic data that contained multiple matches (for example
two different uniprot ID for the same gene) caused problem when visualizing
genome browser (#1815)</li>
<li data-sourcepos="18:3-19:63">Bug fix: when exporting elements the list of selected excluded/included
compartments was too long then the error was raised (#1798)</li>
<li data-sourcepos="20:3-21:27">Bug fix: when merged results in left panel contained different submap link
minerva crashed (<a href="/minerva/core/-/issues/1764" data-reference-type="issue" data-original="#1764" data-link="false" data-link-reference="false" data-project="499" data-issue="10290" data-project-path="minerva/core" data-iid="1764" data-issue-type="issue" data-container="body" data-placement="top" title="MINERVANET - Error Report 2781" class="gfm gfm-issue">#1764</a>)</li>
</ul>2023-01-26T12:38:48+01:00Piotr Gawronpiotr.gawron@uni.lu