core issueshttps://git-r3lab.uni.lu/minerva/core/-/issues2024-01-09T14:42:03+01:00https://git-r3lab.uni.lu/minerva/core/-/issues/1780genome browser isn't working for hg382024-01-09T14:42:03+01:00Ewa Smulagenome browser isn't working for hg38- original ref hg38:[refGene.txt.gz](/uploads/3d473eeca2271a4f6add16cc8ec191dc/refGene.txt.gz)
- corresponding bb file (isn't displaying genes): [refGene38.bb](/uploads/735a7e51e375248e790c5d45cbfa546b/refGene38.bb)
- ref hg38 trimmed...- original ref hg38:[refGene.txt.gz](/uploads/3d473eeca2271a4f6add16cc8ec191dc/refGene.txt.gz)
- corresponding bb file (isn't displaying genes): [refGene38.bb](/uploads/735a7e51e375248e790c5d45cbfa546b/refGene38.bb)
- ref hg38 trimmed to 'basic chromosomes chr1, chr2...': [chromosoms-basic.txt.zip](/uploads/d79819d54cde1dbe9a11d40b1e410ccd/chromosoms-basic.txt.zip)
- bb file that displays hg38 genes in browser (after removing redundant chromosomes): [chromosoms-basic.txt.bb](/uploads/d076008e0acafb03b114839c2c52c151/chromosoms-basic.txt.bb)v18.0Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/1768downloadModel API call with reactionIds with errors2023-11-09T13:01:07+01:00Marek OstaszewskidownloadModel API call with reactionIds with errorsCurrently the API call to download a diagram part by reactionIds:
`$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/models/665:downloadModel?handlerClass=lcsb.mapviewer.converter.model.celldesigner.CellDesig...Currently the API call to download a diagram part by reactionIds:
`$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/models/665:downloadModel?handlerClass=lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser&reactionIds=1032' -i -X GET`
does not behave properly. In the following example diagram:
[minervar_example](https://minerva-dev.lcsb.uni.lu/minerva/index.xhtml?id=minervar_example)
when calling for:
`curl 'https://minerva-dev.lcsb.uni.lu/minerva/api/projects/minervar_example/models/2578:downloadModel?handlerClass=lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser&reactionIds=496329' -i -X GET`
I get the diagram as in the picture, one element (DRD2) should not be there.
![Screenshot_2022-09-21_at_11.42.06](/uploads/04d74fe3a15ccaa378f2a67ce55a0c82/Screenshot_2022-09-21_at_11.42.06.png)https://git-r3lab.uni.lu/minerva/core/-/issues/1740validation of required annotator not working2022-08-25T09:07:36+02:00Ewa Smulavalidation of required annotator not workingParameters selected in "required" are not saved if I change the species. f. ex. if I select required annotator for RNA and close the dialog, they are saved. But if after setting RNA I set up f ex. chemical, required annotators for RNA ar...Parameters selected in "required" are not saved if I change the species. f. ex. if I select required annotator for RNA and close the dialog, they are saved. But if after setting RNA I set up f ex. chemical, required annotators for RNA are forgotten.
![Screen_Shot_2022-08-02_at_18.30.14](/uploads/d022b0689e056091ba99f3e8ab4685db/Screen_Shot_2022-08-02_at_18.30.14.png)Piotr GawronPiotr Gawronhttps://git-r3lab.uni.lu/minerva/core/-/issues/888Z-Index for compartments/pathways not working2021-04-20T11:34:47+02:00Ewa SmulaZ-Index for compartments/pathways not workingIn case the compartment/pathway is entirely covered by bigger compartment/pathway, the Z-Index does not work. The small compartment is not put to the front of the big compartment, although the small one has higher Z-Index. In case the el...In case the compartment/pathway is entirely covered by bigger compartment/pathway, the Z-Index does not work. The small compartment is not put to the front of the big compartment, although the small one has higher Z-Index. In case the elements are overlapping, Z-Index works ok.
[test.xml](/uploads/4369e005c986cdcf9d3c279e4faf25b7/test.xml)