Commit b2b9808d authored by Piotr Gawron's avatar Piotr Gawron

Merge branch 'changelog' into 'devel_13.1.x'

Changelog

See merge request !823
parents 8cc32a40 551bb76c
Pipeline #11184 passed with stage
in 12 minutes and 1 second
minerva (13.1.0~beta.2) unstable; urgency=low
* Bug fix: due to blocking of our requests from ctdbase the autocomplete for
this database is disabled
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 12 Jun 2019 17:00:00 +0200
minerva (13.1.0~beta.1) unstable; urgency=low
* Small improvement: model_name renamed to map_name in data overlay columns
(#827)
* Small improvement: name, type, reference_genome_type and
reference_genome_version column in genetic variant data overlay are
deprecated (#827)
* Bug fix: deprecated columns in data overlay are not visible to the end user
(#827)
* Bug fix: invalid color in data overlay provides proper feedback to the user
(#822)
* Bug fix: genetic variant overlay without name caused problems (#832)
* Bug fix: tair locus identifiers were used improperly - instead of id the
name was used
* Bug fix: plugin tab header wasn't properly resized after adding plugins
that introduced second line for tab selection (#758)
* Bug fix: invisible layer shouldn't be shown in the on th map (#813)
* Bug fix: list of availbale annotators is sorted alphabetically (#815)
* Bug fix: redirect url from export panel is fixed (#819)
* Bug fix: allow to reupload the same file without closing add overlay dialog
(#833)
* Bug fix: gene_name column is allowed only in the genetic variant data
overlay
* Bug fix: protein types are sorted properly in "Select valid annotations"
dialog (#815)
* Bug fix: if there is a description of (sub)map then it is available in
info/submap panel (#824)
* Bug fix: when changing data in edit user dialog there was a need to click
close button twice (#818)
* Bug fix: empty type for data overlay is allowed (#827)
* Bug fix: genetic variants data overlay was ignoring color parameter (#827)
* Bug fix: pathways can be drawn using glyphs (#825)
* Bug fix: empty background overlay doesn't show glyphs, instead standard
visualization is used (#826)
* Bug fix: asynchronous cals on showing/hiding data overlays might cause
problems due to network latency (#830)
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 7 Jun 2019 17:00:00 +0200
minerva (13.1.0~beta.0) unstable; urgency=low
minerva (13.1.0) stable; urgency=medium
* Feature: annotators are more flexible - you can define set of input and
outputs used by annotator (#617)
* Feature: changes in admin panel doesn't require saving - they are saved
automatically (#676)
* Feature: elements can have custom glyphs used for visualization (#487)
* Small improvement: model_name renamed to map_name in data overlay columns
(#827)
* Small improvement: name, type, reference_genome_type and
reference_genome_version column in genetic variant data overlay are
deprecated (#827)
* Small improvement: all bio entities have z-index associated with them
(#487)
* Small improvement: validation of the organism and disease id on map upload
......@@ -97,6 +58,32 @@ minerva (13.1.0~beta.0) unstable; urgency=low
SemanticZoomLevelTransparency (#801)
* Small improvement: export/import from SBML support z-index in LAYOUT
extension
* Bug fix: due to blocking of our requests from ctdbase the autocomplete for
this database is disabled
* Bug fix: deprecated columns in data overlay are not visible to the end user
(#827)
* Bug fix: invalid color in data overlay provides proper feedback to the user
(#822)
* Bug fix: genetic variant overlay without name caused problems (#832)
* Bug fix: tair locus identifiers were used improperly - instead of id the
name was used
* Bug fix: plugin tab header wasn't properly resized after adding plugins
that introduced second line for tab selection (#758)
* Bug fix: invisible layer shouldn't be shown on the map (#813)
* Bug fix: list of availbale annotators is sorted alphabetically (#815)
* Bug fix: redirect url from export panel is fixed (#819)
* Bug fix: allow to reupload the same file without closing add overlay dialog
(#833)
* Bug fix: gene_name column is allowed only in the genetic variant data
overlay
* Bug fix: protein types are sorted properly in "Select valid annotations"
dialog (#815)
* Bug fix: if there is a description of (sub)map then it is available in
info/submap panel (#824)
* Bug fix: empty type for data overlay is allowed (#827)
* Bug fix: genetic variants data overlay was ignoring color parameter (#827)
* Bug fix: asynchronous calls on showing/hiding data overlays might cause
problems due to network latency (#830)
* Bug fix: progress bar of gene genome mapping upload is refreshing properly
(#728)
* Bug fix: when editing project Disease and Organism could not be removed
......@@ -115,7 +102,7 @@ minerva (13.1.0~beta.0) unstable; urgency=low
* Bug fix: layout data was ignored for some reactions when importing from
SBML (#812)
-- Piotr Gawron <piotr.gawron@uni.lu> Mon, 13 May 2019 19:00:00 +0200
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 27 Jun 2019 14:00:00 +0200
minerva (13.0.0) stable; urgency=medium
* Bug fix: Since Oracle Java cannot be installed as debian dependency we use
......
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