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Commit 3be63159 authored by Piotr Gawron's avatar Piotr Gawron

12.2.0~alpha.0 changelog

parent 3c2137ad
Pipeline #8184 passed with stage
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minerva (12.2.0~alpha.0) stable; urgency=medium
* Feature: url GET parameters support all kind of search and selected overlays
highlight
* Feature: user can create custom logging configuration in file
/etc/minerva/log4j.properties
* Feature: plugin panel in admin allows to configure set of available plugins
* Feature: import export from SBML supports RENDER package
* Feature: import export from SBML supports MULTI package
* Feature: API tool providing possibility to transform different types of
file formats
* Feature: current state of the browsed map is reflected in the url (position,
zoom, overlays, search queries, etc.)
* Small improvement: export to SBML includes unit factors
* Small improvement: mesh identifiers are resolved to meshb.nlm.nih.gov urls
* Small improvement: genetics information allows to provide information about
modification on peptide level that could be visualized in MolArt
* Small improvement: allow to control the background and font color of areas
drawn from text areas in CellDesigner "layers"
* Small improvement: config logo location is relative to the root minerva
deployment directory
* Small improvement: there is branding minerva logo in the left panel
* Small improvement: there is possibility to download part of the map limited
to set of reactions/elements
* Small improvement: allow admin to configure parameters displayed in the
left panel
* Small improvement: arrows for Transcription Starting Sites looks more like
in CellDesigner
* Small improvement: popup window appear with info about exceeding max number
of search results when necessary
* Small improvement: plugins can define default width of the container tab
* Small improvement: new miriam type is handled: ClinicalTrials.gov
* Small improvement: click on the border of compartment select the
compartment
* Small improvement: there is max size of the map in configuration panel that
disables upload of too big files
* Small improvement: hitting enter on login page logs in the user (no need to
click on the login button)
* Small improvement: refresh button in overlays panel (useful when data
overlays are uploaded separately in using API calls)
* Small improvement: list of publications is downloadable
* Small improvement: export of reactions support filtering by reaction type
* Small improvement: 'BACK TO MAP' link is available only when guest account
has proper access level
* Small improvement: 'REQUEST AN ACCOUNT' link is available only the contact
email account is provided
* Small improvement: Plugin API allows to show/hide data overlays
* Bug fix: export to CellDesigner align inhibition reaction properly
* Bug fix: export/import to/from SBML handles Heterodimer Association
reaction properly
* Small improvement: export to SBML includes unit factors
* Feature: url GET parameters support all kind of search and selected overlays
highligh
* Bug fix: logo doesn't need to be square
* Bug fix: when clicking on a search link (in overview window), input in the
left tab was not modified
* Bug fix: in admin panel changing of genome version is blocking interface
until data about url is retrieved
* Bug fix: export of species inside complex into CellDesigner was causing
problems when reading the file in CellDesigner
* Bug fix: export to SBGN did not export compartments
* Bug fix: export of complex states to SBGN did not work
* Bug fix: type of the data overlay can be defined in the file content
(useful when uploading genetic variants)
* Bug fix: CLEAR button clears comment checkbox if necessary
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 11 Jan 2019 12:00:00 +0200
minerva (12.1.5) stable; urgency=medium
* Bug fix: Drugbank changed output format which crashed drug connector
* Bug fix: word wrapping fixed in overlay table for long overlay names
in Firefox browser
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 10 Janc 2019 14:00:00 +0200
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 10 Jan 2019 14:00:00 +0200
minerva (12.1.4) stable; urgency=medium
* Bug fix: no check for limit on custom data overlays fixed
......
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