• Backward incompatibility: debian package cannot be upgraded from version prior to 12.1.0 (#1464)
  • Backward incompatibility: layout parameter in minerva url is not supported anymore
  • Backward incompatibility: deprecated columns in data overlays are no longer supported (#958)
  • Backward incompatibility: comment does not contain name anymore (#1070)
  • Backward incompatibility: publication pagination API slightly changed (#1007)
  • Backward incompatibility: elements in data overlay are returned differently when using data overlay API (#1007)
  • Backward incompatibility: deprecated columns in data overlay table are no longer supported: reverseReaction, reaction_identifier, reactionIdentifier, reference_genome_type, reference_genome_version, allel_frequency, lineWidth, elementIdentifier, references, model_name (#958)
  • Backward incompatibility: information about old search queries removed from database (it can be still accessed using proper log managing)
  • Improvement: automatically generated API documentation available in the package (#1016)
  • Improvement: performance improved - map is available immediately after tomcat starts (#1007)
  • Improvement: minerva does not require huge amounts of memory anymore (#1007)
  • Improvement: data overlay allows for multiple hits per element (#1007)
  • Small improvement: backgrounds are separated from general overlays (#1532, #1515)
  • Small improvement: layout of pin popup window is slightly improved (#1493)
  • Small improvement: search results are grouped by submap with hits (#1505)
  • Small improvement: artificial source and sink is created separately for each incomplete reaction (#1475)
  • Small improvement: homomultimer information is provided in API (#1468)
  • Small improvement: missing info about species for SBML parsing warning (#1472)
  • Small improvement: information about dimer in sbgn is provided only once if the information is duplicated in sbgn data (#1358)
  • Small improvement: glyph quality is improved (#1458)
  • Small improvement: search results are group by diagram (#1451)
  • Small improvement: "Failed to fetch" errors are reported in a way that suggest retrying before submitting error report (#738)
  • Small improvement: reverse search pop-up reorganized (#1366)
  • Small improvement: "dbSNP", "IMGT HLA", "PMC", "Complex Portal" identifiers are supported (#1452, #1450, #1420)
  • Small improvement: information about perfect search are stored in the url (#1376)
  • Small improvement: context menu exporting map is more precise about scope (#1447)
  • Small improvement: styling of GENERIC search tab title improved (#1364)
  • Small improvement: SBML render contains information about species shapes (#1055)
  • Small improvement: SBML render contains information about modification residues (#1456)
  • Small improvement: SBML render contains information about structural states (#1456)
  • Small improvement: SBML render contains process rectangle for reactions (#1457)
  • Bug fix: show genetic data overlays in InfoWindow even when no data is available (#1562)
  • Bug fix: gene mapping with empty url caused issues when opening info window (#1557)
  • Bug fix: clear does not show warning about missing disease ID (#1541)
  • Bug fix: two genomic data overlay with two different reference genomes caused issue (#1546)
  • Bug fix: search results were limited to 10 elements
  • Bug fix: Chrome autofill is disabled for "Search: " in admin panel tables
  • Bug fix: search tab becomes active when drug/chemical/mirna result are available (#1491)
  • Bug fix: arrows without a "process" box had an irregular empty space in their lines (#1471)
  • Bug fix: when selecting drug in the alias window the input text is updated (#1365)
  • Bug fix: zoom slider was not updated when clicking on +/- in genome browser (#1064)
  • Bug fix: refreshing page after removing last project on the page redirect to proper page (#1051)
  • Bug fix: removing plugin that does not exist anymore does not raise an error (#1289)
  • Bug fix: md5 hash function of plugin was not computed properly
  • Bug fix: exported gpml for every compartment contained list of species name in the comment section