• Backward incompatible: and/split points are represented as a dot in all new images/uploaded maps (#1253)
  • Backward incompatible: reation will be on top of elements in maps uploaded from formats that does not contain z-index (#1251)
  • Small improvement: "bqbiol:occursIn" and "bqmodel:isDerivedFrom" and handled in annotations (#1190),
  • Small improvement: 3DMET, Evidence Code Ontology, Kegg Glycan, LipidBank, Chemical Component Dictionary annotations are supported (#1190)
  • Small improvement: SWISS-model annotations are supported (#1249),
  • Small improvement: small css improvement in info tab (#1104)
  • Bug fix: upload of SBGN files didn't process unicode characters properly when server was running with encoding different than UTF-8 (#1142)
  • Bug fix: export unknown species to GPML caused pathvisio to crash (#1215)
  • Bug fix: annotations in CD 2.5 caused import to crash (#1125)
  • Bug fix: complex reaction with two required reactants in CD 2.5 caused import to crash (#1125)
  • Bug fix: kinetic equation in reaction that referenced complex (instead of target species) crashed CellDesigner upload (#1212)
  • Bug fix: transcription-translation should be turned into StateTransition reaction when importing GPML (#1236)
  • Bug fix: species graphical shape is taken as secondary indication to species type when importing GPML (#1237)
  • Bug fix: name is assigned to complexes when second complex is defined in it in GPML (#1238)
  • Bug fix: kinetic equation in SBML that used speciesReference id crashed upload (#1190)
  • Bug fix: layout reaction with duplicated reaction element crashed SBML upload (#1190)
  • Bug fix: conversion from SBML to CellDesigner escaped "<" twice (#1228)
  • Bug fix: graphical elements imported from GPML have border color and background color defined properly (#1259)
  • Bug fix: export/import to GPML properly handles degradation (#1241)
  • Bug fix: Select annotation dialog width is at least 840px (#1210)
  • Bug fix: modifiers joined by operator were exported to SBML without line corresponding to the operator (#1199)
  • Bug fix: first state variable that does not match modification residue is translated to structural state when importing from SBGNML (#1088)
  • Bug fix: list of database releases is always updated on DAPI credentials change (#1128)
  • Bug fix: proper error is returned when trying to sign up to DAPI with exisitng account (#1158)
  • Bug fix: session mixed chemical and drug queries when refreshing webpage (#1161)
  • Bug fix: caching data for map with entrez ID crashed
  • Bug fix: not all data were cached about drugs/chemicals/mirnas when "cache data" was checked on project upload
  • Bug fix: when invalid password is provided proper warning is raised (#1159)
  • Bug fix: when no release is accepted in admin panel user is notified that not all databases will be used in search queries (#1159)
  • Bug fix: when exporting to GPML line ends are aligned to new shapes (#1242)
  • Bug fix: when exporting to GPML proper shapes are used for species
  • Bug fix: export of modifications to GPML generated invalid GPML file (#1257)
  • Bug fix: caching file with protin name containing new line character crashed
  • Bug fix: when caching the data on project upload list hint list for mirna, drugs, chemicals were not cached (#1163)