• Feature removal: BioCompendium annotator removed (#32)
  • Feature removal: support for tomcat7 removed (#828)
  • Feature: security layer redesigned - privilege types and scope changed (#636, #624)
  • Feature: log4j is replaced with log4j2 logging mechanism (#291)
  • Feature: database installed via debian package is done via dbconfig-commons (#469)
  • Feature: Replaced connection pool manager C3P0 with better maintained Hikari - restart of postgresql database doesn't require restart of tomcat (#564)
  • Small improvement: debian package can be installed on debian:buster (#879)
  • Small improvement: info window contains information about overlay No (#919)
  • Small improvement: sorting by columns that doesn't make sense in admin panel is disabled (#895)
  • Small improvement: version of minerva is visible in map browser panel
  • Small improvement: small info about annotator details is available in select annotators dialog (#923)
  • Small improvement: CellDesigner layers are always visualized as pathways (#813)
  • Small improvement: notification email uses minerva name and id of affected project (#926)
  • Small improvement: information about person who uploaded project is visible in list of projects (#927)
  • Small improvement: tab with list of glyphs is available when adding project with glyphs (#925)
  • Small improvement: BackgroundColor parameter should be assigned using ":" character (#929)
  • Small improvement: anonymous login is no longer required - each API query outside session is authorized with anonymous user privileges (#629)
  • Small improvement: bcrypt is used for password encryption (#387)
  • Small improvement: caching is active by default for new users when uploading project (#202)
  • Small improvement: when removing overlay in admin panel there is a confirmation dialog (#696)
  • Small improvement: overlay name is obligatory (#698)
  • Small improvement: list of projects in admin panel contains creation date (#447)
  • Small improvement: links in list of publications open in new tab (#447)
  • Small improvement: target gene in search panel contains also information about type of database that identifies the target (#66)
  • Small improvement: redundant 'references' field in gene variants data overlay is now deprecated (#850)
  • Small improvement: information about deprecated columns in data overlay is visible in overlay list (#838)
  • Small improvement: publication list is resizeable (#740)
  • Small improvement: user list on project edit dialog is sortable (#808)
  • Bug fix: exported SBML passes online validation (#831)
  • Bug fix: allow user to remove own comments (#931)
  • Bug fix: validation of project name length is provided (#950)
  • Bug fix: list of "Copy from" elements in "Select valid annotations" dialog is shortened to used bio entity types (#911)
  • Bug fix: version of the project is limited to 20 characters (#951)
  • Bug fix: export to CD could misalign reaction lines that were imported from format that didn't require reaction line to be attached to the species (#933)
  • Bug fix: problem with uploading data_overlays with type included in header (#936)
  • Bug fix: work on FF Private Window mode could cause logout or raise an error on when opening new tab with minerva (#892)
  • Bug fix: fetching list of miRnas resulted sometimes in "Internal Server Error" (#889)
  • Bug fix: edit project dialog verifies organism id (#914)
  • Bug fix: all colors in boolean reaction (from CellDesigner) are processed properly (#907)
  • Bug fix: proper line type for boolean reaction is used on the whole reaction (#908)
  • Bug fix: creating project with too long name hung upload (#916)
  • Bug fix: too long user login threw an error (#915)
  • Bug fix: when uploading generic data overlay the type was not updated in case the type was not specified in the input file (#906)
  • Bug fix: list of types when copying from annotators contains only types that are selectable in the dialog (#911)
  • Bug fix: too long name for data overlay in info window is trimmed (#919)
  • Bug fix: too long name in general overlay list is wrapped (#857)
  • Bug fix: after genome is removed list of genomes is refreshed (#922)
  • Bug fix: REST API bioEntities:search method didn't limit results to the submodel id (#860)
  • Bug fix: Empty Overlay colours were not preserved during export to CellDesigner (#714)
  • Bug fix: problem with unloading plugin is properly handled (#884)
  • Bug fix: upload of invalid plugin doesn't add it to plugin tab and list of loaded plugins (#885)
  • Bug fix: export to CellDesigner of reaction with two modifiers connected with boolean operator resulted was skipping some layout information
  • Bug fix: reaction in SBGNML file containing two products was improperly drawn
  • Bug fix: color handling in CellDesigner did not work properly for modifiers inside boolean gateway
  • Bug fix: CellDesigner file exported from minerva was not fully compliant with SBML standard (#831)
  • Bug fix: MiRNA targets are limited only to the organism associated with the map (#66)
  • Bug fix: Search drug by target element did not return values when this element was annotated automatically (#216)