• Feature: annotators are more flexible - you can define set of input and outputs used by annotator (#617)
  • Feature: changes in admin panel doesn't require saving - they are saved automatically (#676)
  • Feature: elements can have custom glyphs used for visualization (#487)
  • Small improvement: model_name renamed to map_name in data overlay columns (#827)
  • Small improvement: name, type, reference_genome_type and reference_genome_version column in genetic variant data overlay are deprecated (#827)
  • Small improvement: all bio entities have z-index associated with them (#487)
  • Small improvement: validation of the organism and disease id on map upload added (#618)
  • Small improvement: added current username next to logout button in admin panel (#660)
  • Small improvement: New comment dialog does not contain content of previous comment dialog (#680)
  • Small improvement: Left logo is configurable (#731)
  • Small improvement: list of element types in choose annotator dialog is sorted (#798)
  • Small improvement: Plugin API provides list of overview images (#702)
  • Small improvement: Plugin API allows to show/hide overview images (#702)
  • Small improvement: Plugin API allows to trigger search on the map (#702)
  • Small improvement: Plugin API allows to clear search results on map (#702)
  • Small improvement: edit/remove project button is disabled until project is uploaded (#683)
  • Small improvement: warning about capslock is visible on login page when necessary (#658)
  • Small improvement: names of columns in data overlay are unified: no whitespace, "_" used as separator (#596)
  • Small improvement: list of references in drug panel contains PUBMED prefix (#666)
  • Small improvement: list of projects is auto refreshed every 5 seconds if at least one of the project is uploading/removing (#610)
  • Small improvement: passwords to email account and ldap are not sent over API (#732)
  • Small improvement: reactant/product/modifier specific colors are parsed properly from CellDesigner file (#597)
  • Small improvement: Info tab contains information about disease and organism when info is provided
  • Small improvement: Info tab provides information about model annotations and submap tabs provide information about submaps annotations if applicable (#591)
  • Small improvement: uploading sbml file should automatically discover a file type (#784)
  • Small improvement: when plugin listeners crash the system notifies user about problem with a plugin (#767)
  • Small improvement: when exporting reaction and elements there is possibility to filter by (sub)map (#615)
  • Small improvement: during first opening of a map, the zoom level is automatically computed if no default information is provided (#776)
  • Small improvement: when adding new project columns "Root map", "Mapping file" and "Map type" are merged (#700)
  • Small improvement: allow admin to disable CORS check (#802)
  • Small improvement: TransparencyZoomLevelVisibility parameter renamed to SemanticZoomLevelTransparency (#801)
  • Small improvement: export/import from SBML support z-index in LAYOUT extension
  • Bug fix: due to blocking of our requests from ctdbase the autocomplete for this database is disabled
  • Bug fix: deprecated columns in data overlay are not visible to the end user (#827)
  • Bug fix: invalid color in data overlay provides proper feedback to the user (#822)
  • Bug fix: genetic variant overlay without name caused problems (#832)
  • Bug fix: tair locus identifiers were used improperly - instead of id the name was used
  • Bug fix: plugin tab header wasn't properly resized after adding plugins that introduced second line for tab selection (#758)
  • Bug fix: invisible layer shouldn't be shown on the map (#813)
  • Bug fix: list of availbale annotators is sorted alphabetically (#815)
  • Bug fix: redirect url from export panel is fixed (#819)
  • Bug fix: allow to reupload the same file without closing add overlay dialog (#833)
  • Bug fix: gene_name column is allowed only in the genetic variant data overlay
  • Bug fix: protein types are sorted properly in "Select valid annotations" dialog (#815)
  • Bug fix: if there is a description of (sub)map then it is available in info/submap panel (#824)
  • Bug fix: empty type for data overlay is allowed (#827)
  • Bug fix: genetic variants data overlay was ignoring color parameter (#827)
  • Bug fix: asynchronous calls on showing/hiding data overlays might cause problems due to network latency (#830)
  • Bug fix: progress bar of gene genome mapping upload is refreshing properly (#728)
  • Bug fix: when editing project Disease and Organism could not be removed (#616)
  • Bug fix: dashed line partially wasn't dashed in "Unknown Catalysis" and "Unknown Inhibition" reactions (#664)
  • Bug fix: "Unknown Catalysis" and "Unknown Inhibition" reaction end is slightly separated from target phenotype (#664)
  • Bug fix: order of genomes in admin panel doesn't change after refreshing list of genomes (#761)
  • Bug fix: fixing situation when Molart started with variation overlay not having the aa change information
  • Bug fix: plugin contect element width is adjusted when link to tabs are wrapped in more than one line (#758)
  • Bug fix: export to CellDesigner preserve font size (#798)
  • Bug fix: layout data was ignored for some reactions when importing from SBML (#812)